RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	CTAGE4	Q8IX94	777 aa		4.24	□□□□□ -1.73
VPS13C-208	ENST00000559119	ENAH	Q8N8S7	591 aa	Predicted RBP	4.24	□□□□□ -1.73
VPS13C-208	ENST00000559119	WDR20	Q8TBZ3	569 aa		4.24	□□□□□ -1.73
VPS13C-208	ENST00000559119	TMEM190	Q8WZ59	177 aa		4.24	□□□□□ -1.73
VPS13C-208	ENST00000559119	FAM110A	Q9BQ89	295 aa		4.24	□□□□□ -1.73
VPS13C-208	ENST00000559119	ACSL5	Q9ULC5	683 aa		4.24	□□□□□ -1.73
VPS13C-208	ENST00000559119	PSMD14	O00487	310 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	SPINT2	O43291	252 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	ARL4C	P56559	192 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	EFR3A	Q14156	821 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	ZNF766	Q5HY98	468 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	FRG2	Q64ET8	278 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	BRAT1	Q6PJG6	821 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	SLC22A25	Q6T423	547 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	ZNF704	Q6ZNC4	412 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	RRM2B	Q7LG56	351 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	TRPT1	Q86TN4	253 aa	Known RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	GPR180	Q86V85	440 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	SLC38A5	Q8WUX1	472 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	SLC41A2	Q96JW4	573 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	ATOH8	Q96SQ7	321 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	PYM1	Q9BRP8	204 aa	Known RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	H2AFJ	Q9BTM1	129 aa		4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	IFIH1	Q9BYX4	1025 aa	Known RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	INTS2	Q9H0H0	1204 aa	Known RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	TTYH1	Q9H313	450 aa	Predicted RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	CNOT7	Q9UIV1	285 aa	Known RBP	4.23	□□□□□ -1.73
VPS13C-208	ENST00000559119	SEC14L5	O43304	696 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	CTSV	O60911	334 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	EGF	P01133	1207 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	PGM1	P36871	562 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	GRK6	P43250	576 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	GABRB2	P47870	512 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	FASLG	P48023	281 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	PLIN5	Q00G26	463 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	FBXO47	Q5MNV8	452 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	RAD9B	Q6WBX8	426 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	TRIM58	Q8NG06	486 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	HMGCLL1	Q8TB92	370 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	CCT6B	Q92526	530 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	ART5	Q96L15	291 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	MPHOSPH6	Q99547	160 aa	Known RBP	4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	EIF2AK1	Q9BQI3	630 aa	Known RBP	4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	TKTL2	Q9H0I9	626 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	BICC1	Q9H694	974 aa	Known RBP	4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	HSPB7	Q9UBY9	170 aa		4.22	□□□□□ -1.73
VPS13C-208	ENST00000559119	TEX13C	A0A0J9YWL9	993 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZCWPW2	A0A1B0GU75	182 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	FTCD	O95954	541 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	ERVK-10	P10266	1014 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	GNB3	P16520	340 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF23	P17027	643 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	HOXC8	P31273	242 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	CLK1	P49759	484 aa	Known RBP	4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	TAS2R38	P59533	333 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	LMO4	P61968	165 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	MAP3K21	Q5TCX8	1036 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	ATG16L1	Q676U5	607 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	HIST2H2BD	Q6DRA6	164 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	SIGIRR	Q6IA17	410 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	RBMS3	Q6XE24	437 aa	Known RBP	4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	SH2D6	Q7Z4S9	175 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	SPAG16	Q8N0X2	631 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	SAMD3	Q8N6K7	520 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	OR5R1	Q8NH85	324 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	MPHOSPH8	Q99549	860 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	PDZD7	Q9H5P4	517 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	ITM2C	Q9NQX7	267 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	INTS10	Q9NVR2	710 aa	Known RBP	4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	HCN3	Q9P1Z3	774 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	KLHL20	Q9Y2M5	609 aa		4.21	□□□□□ -1.74
VPS13C-208	ENST00000559119	GAGE10	A6NGK3	116 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	CLIC2	O15247	247 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	EIF3D	O15371	548 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	NCAM2	O15394	837 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	SP100	P23497	879 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	HOXA13	P31271	388 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	AHR	P35869	848 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	IRX6	P78412	446 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZFP69	Q49AA0	526 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	TECRL	Q5HYJ1	363 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF280D	Q6N043	979 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	ZNF790	Q6PG37	636 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	PQLC2	Q6ZP29	291 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	QSOX2	Q6ZRP7	698 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	HAPLN4	Q86UW8	402 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	MAP7D3	Q8IWC1	876 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	THAP6	Q8TBB0	222 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	FCAMR	Q8WWV6	532 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	TBC1D20	Q96BZ9	403 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	ARHGEF26	Q96DR7	871 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	GRAMD2B	Q96HH9	432 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	LINC00479	Q96M42	142 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	OPRPN	Q99935	248 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	EGFL8	Q99944	293 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	WDR13	Q9H1Z4	485 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	MARCH4	Q9P2E8	410 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	A4GNT	Q9UNA3	340 aa		4.2	□□□□□ -1.74
VPS13C-208	ENST00000559119	UTY	O14607	1347 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms