RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 EIF3CLB5ME19 914 aaKnown RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 TMX2-CTNND1H3BSU7 103 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 PES1O00541 588 aaKnown RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 FGF10O15520 208 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 NKX2-8O15522 239 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 BUB1O43683 1085 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 KRT7P08729 469 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 ALPIP09923 528 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 RNF224P0DH78 156 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 GPD1P21695 349 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 STAT1P42224 750 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CCR10P46092 362 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CSNK1DP48730 415 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 ZFP36L1Q07352 338 aaKnown RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 KRT31Q15323 416 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 ELOCQ15369 112 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 UGP2Q16851 508 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 KLHL40Q2TBA0 621 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 MAP9Q49MG5 647 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 ATP1A1-AS1Q5TC04 95 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 BRAT1Q6PJG6 821 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 ENPP7Q6UWV6 458 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CLEC17AQ6ZS10 378 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 GK5Q6ZS86 529 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 REC114Q7Z4M0 266 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 SPRED1Q7Z699 444 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 OR6C4Q8NGE1 309 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CXorf40AQ8TE69 158 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 HMCESQ96FZ2 354 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 PDXPQ96GD0 296 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 TUBGCP5Q96RT8 1024 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 EIF3CQ99613 913 aaKnown RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 SLC30A3Q99726 388 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CMKLR1Q99788 373 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CNPY3Q9BT09 278 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 KLC2Q9H0B6 622 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 RASSF4Q9H2L5 321 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 LRRC19Q9H756 370 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 SUDS3Q9H7L9 328 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 CATSPERBQ9H7T0 1116 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 FAM207AQ9NSI2 230 aaPredicted RBP10.04□□□□□ -0.8
SCFD1-220ENST00000556486 TAB2Q9NYJ8 693 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 LHX3Q9UBR4 397 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 OR1A2Q9Y585 309 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 DGKBQ9Y6T7 804 aa10.04□□□□□ -0.8
SCFD1-220ENST00000556486 ANKRD17O75179 2603 aaKnown RBP10.03□□□□□ -0.8
SCFD1-220ENST00000556486 A0A1W2PQC6 194 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 RASA4BC9J798 803 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 STMND1H3BQB6 276 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 K7EM74 188 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 CCP110O43303 1012 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 RASA4O43374 803 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 AGFG2O95081 481 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 HOXC4P09017 264 aaPredicted RBP10.03□□□□□ -0.8
SCFD1-220ENST00000556486 IMPDH2P12268 514 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 COL8A1P27658 744 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 HTR1BP28222 390 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 MMP12P39900 470 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 KLK7P49862 253 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 NDST2P52849 883 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 GYS2P54840 703 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 RHOAP61586 193 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 CACNA1DQ01668 2161 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 CLCQ05315 142 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 SEPT6Q14141 434 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 NFATC4Q14934 902 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 LRRC14Q15048 493 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 CYTH1Q15438 398 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 FXNQ16595 210 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 WSCD2Q2TBF2 565 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 FKBP15Q5T1M5 1219 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 LCE2CQ5TA81 110 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 RIPOR1Q6ZS17 1223 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 GKN2Q86XP6 184 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 DNAAF5Q86Y56 855 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 UNC5BQ8IZJ1 945 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 PYROXD2Q8N2H3 581 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 ECHDC3Q96DC8 303 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 RBM15Q96T37 977 aaKnown RBP eCLIP10.03□□□□□ -0.8
SCFD1-220ENST00000556486 SELENOOQ9BVL4 669 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 EDEM3Q9BZQ6 932 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 VPS16Q9H269 839 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 NLRC4Q9NPP4 1024 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 MRPL40Q9NQ50 206 aaKnown RBP10.03□□□□□ -0.8
SCFD1-220ENST00000556486 LRIT1Q9P2V4 623 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 ANAPC2Q9UJX6 822 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 FZD10Q9ULW2 581 aa10.03□□□□□ -0.8
SCFD1-220ENST00000556486 ENO4A6NNW6 628 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 LGALS16A8MUM7 142 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 PRAMEF11O60813 436 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 RASGRP1O95267 797 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 TPM2P07951 284 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 PNLIPP16233 465 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 NME2P22392 152 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 UGT1A3P35503 534 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 OR1D5P58170 312 aa10.02□□□□□ -0.81
SCFD1-220ENST00000556486 SRP54P61011 504 aaKnown RBP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 RPL7AP62424 266 aaKnown RBP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 NSUN2Q08J23 767 aaKnown RBP eCLIP10.02□□□□□ -0.81
SCFD1-220ENST00000556486 MTM1Q13496 603 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms