RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 LAMP2P13473 410 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 PPARGP37231 505 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 CLCNKAP51800 687 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 RRP1P56182 461 aaKnown RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 DCAF7P61962 342 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 CSNK2A1P68400 391 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 FOXM1Q08050 763 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 COASYQ13057 564 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 CDONQ4KMG0 1287 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 C16orf54Q6UWD8 224 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 IKBIPQ70UQ0 350 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 CACNA2D4Q7Z3S7 1137 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 CHERPQ8IWX8 916 aaKnown RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 CSNK2A3Q8NEV1 391 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 MAGEC3Q8TD91 643 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 ZKSCAN4Q969J2 545 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 ORAI1Q96D31 301 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 BICD1Q96G01 975 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 IGSF21Q96ID5 467 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 FAM84BQ96KN1 310 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 ZNF385AQ96PM9 386 aaKnown RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 SERINC2Q96SA4 455 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 ITPAQ9BY32 194 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 ACSS1Q9NUB1 689 aaPredicted RBP5.03□□□□□ -1.6
SCFD1-211ENST00000554437 WWOXQ9NZC7 414 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 C1RLQ9NZP8 487 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 KCNS2Q9ULS6 477 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 LOXL2Q9Y4K0 774 aa5.03□□□□□ -1.6
SCFD1-211ENST00000554437 RUSC2Q8N2Y8 1516 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 A0A1W2PRQ8 180 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 GOLGA6L9A6NEM1 432 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 MID1O15344 667 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 NDUFS3O75489 264 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 JRKO75564 520 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 LINC00271P0C7V0 271 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 RARGP13631 454 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 HOXB6P17509 224 aaKnown RBP5.02□□□□□ -1.61
SCFD1-211ENST00000554437 HOXC9P31274 260 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 CLCN3P51790 818 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 EEF1A2Q05639 463 aaKnown RBP5.02□□□□□ -1.61
SCFD1-211ENST00000554437 GRIK2Q13002 908 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 EIF4A2Q14240 407 aaKnown RBP5.02□□□□□ -1.61
SCFD1-211ENST00000554437 KRTAP5-11Q6L8G4 156 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 SPSB3Q6PJ21 355 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 OR2AK2Q8NG84 335 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 POMGNT1Q8WZA1 660 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 SGCDQ92629 289 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 TMEM19Q96HH6 336 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 GRAMD2BQ96HH9 432 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 TTC14Q96N46 770 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 CTAGE1Q96RT6 745 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 CMKLR1Q99788 373 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 DDX31Q9H8H2 851 aaKnown RBP5.02□□□□□ -1.61
SCFD1-211ENST00000554437 PCDH9Q9HC56 1237 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 MCM9Q9NXL9 1143 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 VDAC3Q9Y277 283 aa5.02□□□□□ -1.61
SCFD1-211ENST00000554437 A0A0G2JPF8 293 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 HNRNPCL2B2RXH8 293 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 HNRNPCL3B7ZW38 293 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 K7ENM7 598 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 SPINT2O43291 252 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 HNRNPCL4P0DMR1 293 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 ACADMP11310 421 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 CDH2P19022 906 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 CAPN3P20807 821 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 PIK3CAP42336 1068 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 BRWD1-AS2P59051 145 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 ARF3P61204 181 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 ARF1P84077 181 aaKnown RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 NAB2Q15742 525 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 KCNT1Q5JUK3 1230 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 C1QTNF12Q5T7M4 302 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 ANKRD23Q86SG2 305 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 CREBRFQ8IUR6 639 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 OR8H2Q8N162 312 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 BEST3Q8N1M1 668 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 TTC30BQ8N4P2 665 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 PCDH20Q8N6Y1 951 aaKnown RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 USP6NLQ92738 828 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 C1orf74Q96LT6 269 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 MTERF1Q99551 399 aaKnown RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 SPRY4Q9C004 299 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 PDZD7Q9H5P4 517 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 SEBOXQ9HB31 216 aaPredicted RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 EIF2B3Q9NR50 452 aaKnown RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 HCFC1R1Q9NWW0 138 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 PROCRQ9UNN8 238 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 MTMR6Q9Y217 621 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 R3HDM2Q9Y2K5 976 aaKnown RBP5.01□□□□□ -1.61
SCFD1-211ENST00000554437 LYVE1Q9Y5Y7 322 aa5.01□□□□□ -1.61
SCFD1-211ENST00000554437 SMTNL1A8MU46 457 aa5□□□□□ -1.61
SCFD1-211ENST00000554437 SLC16A5O15375 505 aa5□□□□□ -1.61
SCFD1-211ENST00000554437 HCRTR2O43614 444 aa5□□□□□ -1.61
SCFD1-211ENST00000554437 RPN1P04843 607 aaKnown RBP5□□□□□ -1.61
SCFD1-211ENST00000554437 UBA1P22314 1058 aaKnown RBP5□□□□□ -1.61
SCFD1-211ENST00000554437 MAPK4P31152 587 aa5□□□□□ -1.61
SCFD1-211ENST00000554437 TMPOP42166 694 aaKnown RBP5□□□□□ -1.61
SCFD1-211ENST00000554437 PRCPP42785 496 aa5□□□□□ -1.61
SCFD1-211ENST00000554437 GALCP54803 685 aa5□□□□□ -1.61
SCFD1-211ENST00000554437 NLRP5P59047 1200 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms