RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 EPN2O95208 641 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 WNT1P04628 370 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 TSHRP16473 764 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 PSMA3P25788 255 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 XIAPP98170 497 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 ACVR1Q04771 509 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 PEX6Q13608 980 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 CUL1Q13616 776 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 KYAT3Q6YP21 454 aaKnown RBP21.08■□□□□ 0.96
VPS29-206ENST00000549578 PTAR1Q7Z6K3 402 aaPredicted RBP21.08■□□□□ 0.96
VPS29-206ENST00000549578 ABI3BPQ7Z7G0 1075 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 NLRP8Q86W28 1048 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 TRAM1L1Q8N609 369 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 HDAC10Q969S8 669 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 ZNF669Q96BR6 464 aaPredicted RBP21.08■□□□□ 0.96
VPS29-206ENST00000549578 LOXL4Q96JB6 756 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 C19orf43Q9BQ61 176 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 SAYSD1Q9NPB0 183 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 RAPGEFL1Q9UHV5 662 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 TEX264Q9Y6I9 313 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 RPS6KL1Q9Y6S9 549 aa21.08■□□□□ 0.96
VPS29-206ENST00000549578 FRYLO94915 3013 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 FAM237BA0A1B0GVD1 139 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 A0A1W2PR77 199 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 CCDC162PA2VCL2 907 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 OR51F1A6NGY5 319 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 A6NNZ2 444 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 PRAMEF1O95521 474 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 GNSP15586 552 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 CD38P28907 300 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 MC4RP32245 332 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 CSNK1EP49674 416 aaKnown RBP21.07■□□□□ 0.96
VPS29-206ENST00000549578 PFN3P60673 137 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 TUBB4BP68371 445 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 SMAD1Q15797 465 aaKnown RBP21.07■□□□□ 0.96
VPS29-206ENST00000549578 ATP13A5Q4VNC0 1218 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 PEAR1Q5VY43 1037 aaPredicted RBP21.07■□□□□ 0.96
VPS29-206ENST00000549578 LAIR1Q6GTX8 287 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 Q6ZSR6 202 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 HEATR4Q86WZ0 1026 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 ZBED8Q8IZ13 594 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 OR13H1Q8NG92 308 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 UBXN4Q92575 508 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 PEX13Q92968 403 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 LRRC39Q96DD0 335 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 FCRL3Q96P31 734 aaPredicted RBP21.07■□□□□ 0.96
VPS29-206ENST00000549578 ZSCAN5AQ9BUG6 496 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 FAM129AQ9BZQ8 928 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 ARRDC1-AS1Q9H2J1 176 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 SUSD2Q9UGT4 822 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 APPL1Q9UKG1 709 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 NFU1Q9UMS0 254 aa21.07■□□□□ 0.96
VPS29-206ENST00000549578 A0A1B0GTW7 788 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 H7C0S8 307 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 INPP4BO15327 924 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A9O60656 530 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 SRP72O76094 671 aaKnown RBP21.06■□□□□ 0.96
VPS29-206ENST00000549578 PGAM1P18669 254 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A6P19224 532 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A1P22309 533 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A4P22310 534 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 CA5AP35218 305 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A3P35503 534 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A5P35504 534 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 AFF3P51826 1226 aaKnown RBP21.06■□□□□ 0.96
VPS29-206ENST00000549578 CCDC6Q16204 474 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 ANKRD20A4Q4UJ75 823 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 ARMC3Q5W041 872 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 TMEM135Q86UB9 458 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 FBXO36Q8NEA4 188 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 CFAP36Q96G28 342 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 FMO2Q99518 471 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 APOOQ9BUR5 198 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 FOXP3Q9BZS1 431 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 WDR26Q9H7D7 661 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A7Q9HAW7 530 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A10Q9HAW8 530 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 UGT1A8Q9HAW9 530 aa21.06■□□□□ 0.96
VPS29-206ENST00000549578 MTRF1LQ9UGC7 380 aaKnown RBP21.06■□□□□ 0.96
VPS29-206ENST00000549578 EIF3HO15372 352 aaKnown RBP eCLIP21.05■□□□□ 0.96
VPS29-206ENST00000549578 USP1O94782 785 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 PRSS56P0CW18 603 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 THEGLP0DJG4 465 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 TRIM23P36406 574 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 MPLP40238 635 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 PRAMEP78395 509 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 CBLBQ13191 982 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 ERCC6LQ2NKX8 1250 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 TPRG1LQ5T0D9 272 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 ADAMTSL4Q6UY14 1074 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 TRIM74Q86UV6 250 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 GSPT2Q8IYD1 628 aaKnown RBP21.05■□□□□ 0.96
VPS29-206ENST00000549578 MFSD2AQ8NA29 543 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 OR6P1Q8NGX9 317 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 FUBP1Q96AE4 644 aaKnown RBP21.05■□□□□ 0.96
VPS29-206ENST00000549578 KLHDC7BQ96G42 594 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 NAT9Q9BTE0 207 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 LGR4Q9BXB1 951 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 FAM96AQ9H5X1 160 aa21.05■□□□□ 0.96
VPS29-206ENST00000549578 ZC3H7BQ9UGR2 993 aaKnown RBP21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms