RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SHCBP1LQ9BZQ2 653 aa5.26□□□□□ -1.57
USP28-213ENST00000544967 CWH43Q9H720 699 aa5.26□□□□□ -1.57
USP28-213ENST00000544967 POLR1BQ9H9Y6 1135 aa5.26□□□□□ -1.57
USP28-213ENST00000544967 ZC3H7BQ9UGR2 993 aaKnown RBP5.26□□□□□ -1.57
USP28-213ENST00000544967 TBX20Q9UMR3 447 aa5.26□□□□□ -1.57
USP28-213ENST00000544967 ST3GAL5Q9UNP4 418 aa5.26□□□□□ -1.57
USP28-213ENST00000544967 RWDD3Q9Y3V2 267 aa5.26□□□□□ -1.57
USP28-213ENST00000544967 ARPC4-TTLL3A0A0A6YYG9 625 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 BBIP1A8MTZ0 92 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 DLGAP1O14490 977 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HDAC3O15379 428 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GABARAPO95166 117 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 VAPBO95292 243 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TOP3BO95985 862 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 MPOP05164 745 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GPIP06744 558 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ENO2P09104 434 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 ARF4P18085 180 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 TCEA1P23193 301 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 IDUAP35475 653 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PPP5CP53041 499 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PLIN5Q00G26 463 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 RAD51Q06609 339 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 FOXM1Q08050 763 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 NIPAL4Q0D2K0 466 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 DMP1Q13316 513 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 NOMO1Q15155 1222 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HADHQ16836 314 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 COQ5Q5HYK3 327 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GPR107Q5VW38 600 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KAZNQ674X7 775 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 UGT3A1Q6NUS8 523 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 SLC27A1Q6PCB7 646 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 XKRXQ6PP77 449 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TMEM26Q6ZUK4 368 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KCTD8Q6ZWB6 473 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HERC6Q8IVU3 1022 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TCEAL8Q8IYN2 117 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CMASQ8NFW8 434 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 POP5Q969H6 163 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 FKBP10Q96AY3 582 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ROPN1LQ96C74 230 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 FAR2Q96K12 515 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KLF6Q99612 283 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 AIFM2Q9BRQ8 373 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 C17orf80Q9BSJ5 609 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 DCUN1D5Q9BTE7 237 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MECRQ9BV79 373 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 LMAN2LQ9H0V9 348 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 MARCH7Q9H992 704 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 AGPAT4Q9NRZ5 378 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 SEPT10Q9P0V9 454 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 VWA7Q9Y334 891 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GRIP1Q9Y3R0 1128 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 A0A087WZ62 844 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 BCLAF3A2AJT9 711 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 HEATR9A2RTY3 570 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HMX2A2RU54 273 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 FGBP02675 491 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 VTNP04004 478 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GSNP06396 782 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CTRB1P17538 263 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PTPN1P18031 435 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 CD58P19256 250 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CD247P20963 164 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CD9P21926 228 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PBLDP30039 288 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 BMPR1AP36894 532 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 GARSP41250 739 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 RAP1GAPP47736 663 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 SLC12A2P55011 1212 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 P2RX3P56373 397 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ADARB1P78563 741 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 OTUD4Q01804 1114 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 ART3Q13508 389 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 ACOX1Q15067 660 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 RAB30Q15771 203 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 KCTD19Q17RG1 926 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 MAJINQ3KP22 176 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CLLU1OSQ5K130 101 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CTRB2Q6GPI1 263 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 LCN8Q6JVE9 175 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 NOTUMQ6P988 496 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CHSY3Q70JA7 882 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 LINC00523Q86TU6 105 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CDR2LQ86X02 465 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 LIX1LQ8IVB5 337 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 PHTF2Q8N3S3 785 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 LRRC71Q8N4P6 559 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 NKAPQ8N5F7 415 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 PPM1NQ8N819 430 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 HDAC2Q92769 488 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 CDKL2Q92772 493 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 TMEM143Q96AN5 459 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 SLCO4A1Q96BD0 722 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CCDC127Q96BQ5 260 aa5.25□□□□□ -1.57
USP28-213ENST00000544967 CENPNQ96H22 339 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 EBNA1BP2Q99848 306 aaKnown RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 FDXACB1Q9BRP7 624 aaPredicted RBP5.25□□□□□ -1.57
USP28-213ENST00000544967 KIFC3Q9BVG8 833 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms