RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NCAM2O15394 837 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SLC22A3O75751 556 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 PIRTP0C851 137 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 PABPC1P11940 636 aaKnown RBP14.19□□□□□ -0.14
LIMS1-215ENST00000544547 RGS4P49798 205 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 MTPNP58546 118 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 C1QTNF12Q5T7M4 302 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 NUDT18Q6ZVK8 323 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 TFAP2DQ7Z6R9 452 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 LEMD2Q8NC56 503 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SMG8Q8ND04 991 aaKnown RBP14.19□□□□□ -0.14
LIMS1-215ENST00000544547 NEK6Q9HC98 313 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM9Q9P0T7 183 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 CCDC182A6NF36 153 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 AIREO43918 545 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 CELF2O95319 508 aaKnown RBP14.19□□□□□ -0.14
LIMS1-215ENST00000544547 PRKACGP22612 351 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 LAPTM5Q13571 262 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 TIFABQ6ZNK6 161 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 NECAB2Q7Z6G3 386 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 ABHD11Q8NFV4 315 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SORT1Q99523 831 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SLC27A5Q9Y2P5 690 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 A6NL46 340 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.19□□□□□ -0.14
LIMS1-215ENST00000544547 TMCC2O75069 709 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 CDH1P12830 882 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 OR2B6P58173 313 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 ARHGEF7Q14155 803 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 UBE2UQ5VVX9 321 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 RAP1GAP2Q684P5 730 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 FAM45BPQ6NSW5 357 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF773Q6PK81 442 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 OR2T12Q8NG77 320 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 TWIST2Q8WVJ9 160 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 ESAMQ96AP7 390 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 MRPL45Q9BRJ2 306 aaKnown RBP14.19□□□□□ -0.14
LIMS1-215ENST00000544547 FTHL17Q9BXU8 183 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 POU2F3Q9UKI9 436 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SPATA2Q9UM82 520 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 PIP5K1BO14986 540 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 ITIH1P19827 911 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 MED22Q15528 200 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 PPP4R4Q6NUP7 873 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 BORAQ6PGQ7 559 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM192Q8IY95 271 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 KIAA0319LQ8IZA0 1049 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 Q8N9G6 341 aaPredicted RBP14.19□□□□□ -0.14
LIMS1-215ENST00000544547 CLEC4CQ8WTT0 213 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SPATC1LQ9H0A9 340 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 SMURF2Q9HAU4 748 aa14.19□□□□□ -0.14
LIMS1-215ENST00000544547 AQP12BA6NM10 295 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 STX7O15400 261 aaKnown RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 RGS10O43665 173 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 MAFO75444 373 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 MT-CYBP00156 380 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 IL1BP01584 269 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 COL6A2P12110 1019 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 CLCQ05315 142 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 MAPKAPK3Q16644 382 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 DGKKQ5KSL6 1271 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 FKBP1CQ5VVH2 108 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 TRIQKQ629K1 86 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 AQP12AQ8IXF9 295 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 FOPNLQ96NB1 174 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 ACTR8Q9H981 624 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 OR12D3Q9UGF7 316 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 ERVK-11Q9UQG0 969 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 MYH14Q7Z406 1995 aaKnown RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 USP54Q70EL1 1684 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 XPNPEP2O43895 674 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 IDO1P14902 403 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 ITGB6P18564 788 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 GTF2E2P29084 291 aaKnown RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 FMO4P31512 558 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 THPOP40225 353 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 SKIV2LQ15477 1246 aaKnown RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 SDE2Q6IQ49 451 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 TMBIM1Q969X1 311 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 ITPKCQ96DU7 683 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 PIWIL1Q96J94 861 aaKnown RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 YME1L1Q96TA2 773 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 TKTL2Q9H0I9 626 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 VWA7Q9Y334 891 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 ADAMTS7Q9UKP4 1686 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 BBIP1A8MTZ0 92 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 EFCAB9A8MZ26 197 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 FFAR3O14843 346 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 GPR42O15529 346 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 SEC22BO75396 215 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 CNPP09543 421 aaKnown RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 CD36P16671 472 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 CPT1AP50416 773 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 DAG1Q14118 895 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 SYTL3Q4VX76 610 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF57Q68EA5 555 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-215ENST00000544547 PIGZQ86VD9 579 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 RAB43Q86YS6 212 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 YAF2Q8IY57 180 aa14.18□□□□□ -0.14
LIMS1-215ENST00000544547 OR10Q1Q8NGQ4 319 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms