RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 FRG1Q14331 258 aaKnown RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 DRAP1Q14919 205 aaPredicted RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 USP41Q3LFD5 358 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 SLC9B1Q4ZJI4 515 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 SETMARQ53H47 684 aaPredicted RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 RILPL1Q5EBL4 403 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 KCNT1Q5JUK3 1230 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 PMS2CLQ68D20 193 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 SIGIRRQ6IA17 410 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 TTI2Q6NXR4 508 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 TSSK4Q6SA08 328 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 FOXL2NBQ6ZUU3 175 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 ZNF329Q86UD4 541 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 RNF113BQ8IZP6 322 aaKnown RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 CSNK2A3Q8NEV1 391 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 LNX1Q8TBB1 728 aaPredicted RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 DNAAF4Q8WXU2 420 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 PKP4Q99569 1192 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 NUDT16L1Q9BRJ7 211 aaKnown RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 HAUS8Q9BT25 410 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 AGXT2Q9BYV1 514 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 PPP1R3EQ9H7J1 279 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 KAT14Q9H8E8 782 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 DDX4Q9NQI0 724 aaKnown RBP2.77□□□□□ -1.97
CD44-238ENST00000534296 PCDHB16Q9NRJ7 776 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 TBC1D22BQ9NU19 505 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 HAUS2Q9NVX0 235 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 C1RLQ9NZP8 487 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 DLGAP2Q9P1A6 1054 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 HAO1Q9UJM8 370 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 MTMR6Q9Y217 621 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 LOXL2Q9Y4K0 774 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 LYVE1Q9Y5Y7 322 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 KCNE2Q9Y6J6 123 aa2.77□□□□□ -1.97
CD44-238ENST00000534296 CGNL1Q0VF96 1302 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 MYO1GB0I1T2 1018 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 SNAP23O00161 211 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 TAF4O00268 1085 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 DVL1O14640 695 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 HS3ST1O14792 307 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 MID1O15344 667 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 SOCS5O75159 536 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 NDUFS3O75489 264 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 SLC25A12O75746 678 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 TMEM11P17152 192 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 EPHA8P29322 1005 aaPredicted RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 SHMT1P34896 483 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 MATR3P43243 847 aaKnown RBP eCLIP2.76□□□□□ -1.97
CD44-238ENST00000534296 RXRGP48443 463 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 ZNF132P52740 706 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 DVL1P1P54792 670 aaPredicted RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 EIF5P55010 431 aaKnown RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 HNRNPH2P55795 449 aaKnown RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 PITX1P78337 314 aaPredicted RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 TFAP4Q01664 338 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PTP4A2Q12974 167 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 SGO1Q5FBB7 561 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PAPPA-AS1Q5QFB9 102 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PDSS1Q5T2R2 415 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 FRG2Q64ET8 278 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PLEKHA7Q6IQ23 1121 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 MZT2BQ6NZ67 158 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 FBXO46Q6PJ61 603 aaPredicted RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 IKBIPQ70UQ0 350 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 GPR180Q86V85 440 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 KMT5CQ86Y97 462 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 WDR63Q8IWG1 891 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 RPAP2Q8IXW5 612 aaPredicted RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 TAGAPQ8N103 731 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 ADSSL1Q8N142 457 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 MUC20Q8N307 709 aaPredicted RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 SPATA6LQ8N4H0 392 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 NGEFQ8N5V2 710 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 ZNF441Q8N8Z8 693 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 DMBX1Q8NFW5 382 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 OR13A1Q8NGR1 328 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 KCNG4Q8TDN1 519 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 SCFD2Q8WU76 684 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 JAKMIP2Q96AA8 810 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 INTS12Q96CB8 462 aaKnown RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 SLC41A2Q96JW4 573 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 TMEM68Q96MH6 324 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 NEUROD6Q96NK8 337 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 QRFPRQ96P65 431 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PIP5K1AQ99755 562 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PLEKHA4Q9H4M7 779 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 ESRP2Q9H6T0 727 aaKnown RBP2.76□□□□□ -1.97
CD44-238ENST00000534296 BRF2Q9HAW0 419 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 ASAH2Q9NR71 780 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 FAM118AQ9NWS6 357 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 SWAP70Q9UH65 585 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 PADI1Q9ULC6 663 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 KCNS2Q9ULS6 477 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 NAALADL1Q9UQQ1 740 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 RABGAP1Q9Y3P9 1069 aa2.76□□□□□ -1.97
CD44-238ENST00000534296 FAM237BA0A1B0GVD1 139 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 PRSS47A8MTI9 375 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 SPINT2O43291 252 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 TNFSF14O43557 240 aa2.75□□□□□ -1.97
CD44-238ENST00000534296 GPC4O75487 556 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms