RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NUDT22Q9BRQ3 303 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 ANP32EQ9BTT0 268 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 RIOK2Q9BVS4 552 aaKnown RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 STN1Q9H668 368 aaKnown RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 PCDH9Q9HC56 1237 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 ZNHIT6Q9NWK9 470 aaKnown RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 RPL26L1Q9UNX3 145 aaKnown RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 ANKRD36A6QL64 1941 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 ATMQ13315 3056 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 TRBV23OR9-2A0A075B6M9 112 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 C1orf232A0A0U1RR37 186 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 J3QKU1 62 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 HGSO14964 777 aaPredicted RBP14.65□□□□□ -0.06
VPS28-215ENST00000531924 EFSO43281 561 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 ZIC2O95409 532 aaPredicted RBP14.65□□□□□ -0.06
VPS28-215ENST00000531924 CD1CP29017 333 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 ETV5P41161 510 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 ARSEP51690 589 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 STC1P52823 247 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 NKAIN2Q5VXU1 208 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 TMPRSS9Q7Z410 1059 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 CCDC13Q8IYE1 715 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 NAGSQ8N159 534 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 RCBTB1Q8NDN9 531 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.65□□□□□ -0.06
VPS28-215ENST00000531924 PATE1Q8WXA2 126 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 FATE1Q969F0 183 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 CCDC74BQ96LY2 380 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 SMIM14Q96QK8 99 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 SLC38A3Q99624 504 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 TDRD1Q9BXT4 1180 aaKnown RBP14.65□□□□□ -0.06
VPS28-215ENST00000531924 MAK16Q9BXY0 300 aaKnown RBP14.65□□□□□ -0.06
VPS28-215ENST00000531924 ADGRE3Q9BY15 652 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 PLEKHM1Q9Y4G2 1056 aa14.65□□□□□ -0.06
VPS28-215ENST00000531924 COL27A1Q8IZC6 1860 aaPredicted RBP14.65□□□□□ -0.06
VPS28-215ENST00000531924 LRP4O75096 1905 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 CFAP46Q8IYW2 2715 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 IGHV5-10-1A0A0J9YXX1 117 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 CLDN7O95471 211 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 JCHAINP01591 159 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 GYPCP04921 128 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 TPM1P09493 284 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 CASP14P31944 242 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 ATP1A2P50993 1020 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 GBE1Q04446 702 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 TRA2AQ13595 282 aaKnown RBP eCLIP14.64□□□□□ -0.07
VPS28-215ENST00000531924 NR1D2Q14995 579 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 PYCR3Q53H96 274 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 VASH2Q86V25 355 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 AGBL5Q8NDL9 886 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 OR4D9Q8NGE8 314 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 OR10G6Q8NH81 332 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 SCARF2Q96GP6 870 aaPredicted RBP14.64□□□□□ -0.07
VPS28-215ENST00000531924 TAAR9Q96RI9 348 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 AGAP2Q99490 1192 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 MLPHQ9BV36 600 aaPredicted RBP14.64□□□□□ -0.07
VPS28-215ENST00000531924 SEMA4CQ9C0C4 833 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 B3GNT4Q9C0J1 378 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 FAM83DQ9H4H8 585 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 PKD2L2Q9NZM6 624 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 FOXJ2Q9P0K8 574 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 HEY1Q9Y5J3 304 aa14.64□□□□□ -0.07
VPS28-215ENST00000531924 HELZ2Q9BYK8 2649 aaKnown RBP14.64□□□□□ -0.07
VPS28-215ENST00000531924 KIF26BQ2KJY2 2108 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 IGHV1OR21-1A0A087WYE8 117 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 B8ZZF3 427 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 C9orf172C9J069 976 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 STMND1H3BQB6 276 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 PPM1DO15297 605 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 AKR1B10O60218 316 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 SOD1P00441 154 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 HLA-DQB2P05538 268 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 CCL4P13236 92 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 SLC2A4P14672 509 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 MPSTP25325 297 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 CD86P42081 329 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 LIMK2P53671 638 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 TAS2R40P59535 323 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 GPLD1P80108 840 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 MESDQ14696 234 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 SLC18A3Q16572 532 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 ALG1LQ6GMV1 187 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 XKR5Q6UX68 686 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 ZNF574Q6ZN55 896 aaPredicted RBP14.63□□□□□ -0.07
VPS28-215ENST00000531924 CHST15Q7LFX5 561 aaPredicted RBP14.63□□□□□ -0.07
VPS28-215ENST00000531924 RAVER1Q8IY67 606 aaKnown RBP14.63□□□□□ -0.07
VPS28-215ENST00000531924 LRRN4Q8WUT4 740 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 JPH3Q8WXH2 748 aaPredicted RBP14.63□□□□□ -0.07
VPS28-215ENST00000531924 FAM117AQ9C073 453 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 HEMK1Q9Y5R4 338 aaPredicted RBP14.63□□□□□ -0.07
VPS28-215ENST00000531924 ST14Q9Y5Y6 855 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 ZNF462Q96JM2 2506 aa14.63□□□□□ -0.07
VPS28-215ENST00000531924 LRRD1A4D1F6 860 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 RGSL1A5PLK6 1076 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 KCNK1O00180 336 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 CBFA2T2O43439 604 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 DUX1O43812 170 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 SNX2O60749 519 aa14.62□□□□□ -0.07
VPS28-215ENST00000531924 ATP1A1P05023 1023 aaKnown RBP14.62□□□□□ -0.07
VPS28-215ENST00000531924 ITGB2P05107 769 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms