RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 CYP19A1P11511 503 aaPredicted RBP3□□□□□ -1.93
CD44-234ENST00000531873 MUTP22033 750 aa3□□□□□ -1.93
CD44-234ENST00000531873 FBLP22087 321 aaKnown RBP3□□□□□ -1.93
CD44-234ENST00000531873 UBA1P22314 1058 aaKnown RBP3□□□□□ -1.93
CD44-234ENST00000531873 CERS1P27544 350 aa3□□□□□ -1.93
CD44-234ENST00000531873 CTNNA1P35221 906 aaKnown RBP3□□□□□ -1.93
CD44-234ENST00000531873 PRCPP42785 496 aa3□□□□□ -1.93
CD44-234ENST00000531873 CCR3P51677 355 aa3□□□□□ -1.93
CD44-234ENST00000531873 ELLP55199 621 aaPredicted RBP3□□□□□ -1.93
CD44-234ENST00000531873 P2RX3P56373 397 aa3□□□□□ -1.93
CD44-234ENST00000531873 TMF1P82094 1093 aa3□□□□□ -1.93
CD44-234ENST00000531873 TFCP2Q12800 502 aa3□□□□□ -1.93
CD44-234ENST00000531873 CAMK2DQ13557 499 aa3□□□□□ -1.93
CD44-234ENST00000531873 PNLIPRP3Q17RR3 467 aa3□□□□□ -1.93
CD44-234ENST00000531873 Q4G0T1 1027 aa3□□□□□ -1.93
CD44-234ENST00000531873 ZNF805Q5CZA5 627 aa3□□□□□ -1.93
CD44-234ENST00000531873 Q5PR19 223 aa3□□□□□ -1.93
CD44-234ENST00000531873 DAB2IPQ5VWQ8 1189 aa3□□□□□ -1.93
CD44-234ENST00000531873 NUGGCQ68CJ6 796 aa3□□□□□ -1.93
CD44-234ENST00000531873 KRT80Q6KB66 452 aa3□□□□□ -1.93
CD44-234ENST00000531873 TEX38Q6PEX7 206 aa3□□□□□ -1.93
CD44-234ENST00000531873 TRAT1Q6PIZ9 186 aa3□□□□□ -1.93
CD44-234ENST00000531873 SLC2A7Q6PXP3 512 aa3□□□□□ -1.93
CD44-234ENST00000531873 SUSD1Q6UWL2 747 aa3□□□□□ -1.93
CD44-234ENST00000531873 CAMK1DQ8IU85 385 aa3□□□□□ -1.93
CD44-234ENST00000531873 EPHX4Q8IUS5 362 aa3□□□□□ -1.93
CD44-234ENST00000531873 ARID3BQ8IVW6 561 aaPredicted RBP3□□□□□ -1.93
CD44-234ENST00000531873 FOXRED2Q8IWF2 684 aa3□□□□□ -1.93
CD44-234ENST00000531873 THNSL1Q8IYQ7 743 aa3□□□□□ -1.93
CD44-234ENST00000531873 TTC30BQ8N4P2 665 aa3□□□□□ -1.93
CD44-234ENST00000531873 NEXN-AS1Q8NBZ9 246 aa3□□□□□ -1.93
CD44-234ENST00000531873 TMEM174Q8WUU8 243 aa3□□□□□ -1.93
CD44-234ENST00000531873 NSMCE1Q8WV22 266 aa3□□□□□ -1.93
CD44-234ENST00000531873 SLC35F5Q8WV83 523 aa3□□□□□ -1.93
CD44-234ENST00000531873 INPP5DQ92835 1189 aa3□□□□□ -1.93
CD44-234ENST00000531873 ZNF653Q96CK0 615 aa3□□□□□ -1.93
CD44-234ENST00000531873 ZG16BQ96DA0 208 aa3□□□□□ -1.93
CD44-234ENST00000531873 APOLD1Q96LR9 279 aa3□□□□□ -1.93
CD44-234ENST00000531873 ZNF570Q96NI8 536 aa3□□□□□ -1.93
CD44-234ENST00000531873 FAM129AQ9BZQ8 928 aa3□□□□□ -1.93
CD44-234ENST00000531873 GPR88Q9GZN0 384 aa3□□□□□ -1.93
CD44-234ENST00000531873 PRSS22Q9GZN4 317 aa3□□□□□ -1.93
CD44-234ENST00000531873 SLCO5A1Q9H2Y9 848 aa3□□□□□ -1.93
CD44-234ENST00000531873 OPA3Q9H6K4 179 aa3□□□□□ -1.93
CD44-234ENST00000531873 MAGIXQ9H6Y5 334 aa3□□□□□ -1.93
CD44-234ENST00000531873 SEBOXQ9HB31 216 aaPredicted RBP3□□□□□ -1.93
CD44-234ENST00000531873 EPB41L5Q9HCM4 733 aa3□□□□□ -1.93
CD44-234ENST00000531873 TMEM51Q9NW97 253 aa3□□□□□ -1.93
CD44-234ENST00000531873 COG5Q9UP83 839 aa3□□□□□ -1.93
CD44-234ENST00000531873 SEC23IPQ9Y6Y8 1000 aaKnown RBP3□□□□□ -1.93
CD44-234ENST00000531873 FLT1P17948 1338 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 TTC3P53804 2025 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 EVPLQ92817 2033 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 FAM170AA1A519 330 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 CPED1A4D0V7 1026 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 TMEM8BA6NDV4 472 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 CGB1A6NKQ9 187 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 PI4K2BG5E9Z4 385 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 ZC3H11AO75152 810 aaKnown RBP eCLIP2.99□□□□□ -1.93
CD44-234ENST00000531873 TBCAO75347 108 aaKnown RBP2.99□□□□□ -1.93
CD44-234ENST00000531873 TADA2AO75478 443 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 GPC4O75487 556 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 RSL1D1O76021 490 aaKnown RBP2.99□□□□□ -1.93
CD44-234ENST00000531873 DDNO94850 711 aaPredicted RBP2.99□□□□□ -1.93
CD44-234ENST00000531873 EPN2O95208 641 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 KCNK5O95279 499 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 HIST1H2ABP04908 130 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 FYNP06241 537 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 FGF2P09038 288 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 SCG2P13521 617 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 TNFRSF1BP20333 461 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 HIST1H2ADP20671 130 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 GPTP24298 496 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 PTAFRP25105 342 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 MSH2P43246 934 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 RASSF2P50749 326 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 KRTAP10-11P60412 298 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 RBP5P82980 135 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 SRSF1Q07955 248 aaKnown RBP eCLIP2.99□□□□□ -1.93
CD44-234ENST00000531873 GRSF1Q12849 480 aaKnown RBP eCLIP2.99□□□□□ -1.93
CD44-234ENST00000531873 TRAF1Q13077 416 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 CTTNQ14247 550 aaKnown RBP2.99□□□□□ -1.93
CD44-234ENST00000531873 MYBPC2Q14324 1141 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 COG2Q14746 738 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 EFNB3Q15768 340 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 LETM2Q2VYF4 491 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 MYLK3Q32MK0 819 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 C10orf25Q5T742 122 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 NSUN5P2Q63ZY6 315 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 SLC18B1Q6NT16 456 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 METTL2BQ6P1Q9 378 aaKnown RBP2.99□□□□□ -1.93
CD44-234ENST00000531873 B3GNT6Q6ZMB0 384 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 SLC16A12Q6ZSM3 486 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 Q6ZSV7 163 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 HIST3H2AQ7L7L0 130 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 CHST3Q7LGC8 479 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 ATG9AQ7Z3C6 839 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 CCDC186Q7Z3E2 898 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 RD3Q7Z3Z2 195 aa2.99□□□□□ -1.93
CD44-234ENST00000531873 CAMKMTQ7Z624 323 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms