RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ACBD5Q5T8D3 534 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 ERICH6BQ5W0A0 696 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 SP5Q6BEB4 398 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 SPNS3Q6ZMD2 512 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 C11orf57Q6ZUT1 292 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 RRAGAQ7L523 313 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 RHOT1Q8IXI2 618 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 MMP21Q8N119 569 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 SFRP1Q8N474 314 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 C1orf131Q8NDD1 294 aaKnown RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 ZNF397Q8NF99 534 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 THAP4Q8WY91 577 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 SEC14L1Q92503 715 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 PGAP3Q96FM1 320 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 INTS4Q96HW7 963 aaKnown RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 C1orf74Q96LT6 269 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 KREMEN1Q96MU8 473 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 ZNF396Q96N95 335 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 TBCBQ99426 244 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 NUDT9Q9BW91 350 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 ING2Q9H160 280 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 LHX9Q9NQ69 397 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 PHPT1Q9NRX4 125 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 PPARGC1AQ9UBK2 798 aaKnown RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 LHX3Q9UBR4 397 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 STAP1Q9ULZ2 295 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 PCDHA7Q9UN72 937 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 CNTN6Q9UQ52 1028 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 DCHS2Q6V1P9 2916 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 CNTRLQ7Z7A1 2325 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 CFAP69A5D8W1 941 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 PDE2AO00408 941 aaPredicted RBP8.17□□□□□ -1.1
CD44-232ENST00000531118 RAMP2O60895 175 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 FUCA1P04066 466 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 IVLP07476 585 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 ADCY8P40145 1251 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 GFERP55789 205 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 HHEXQ03014 270 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 LAMB3Q13751 1172 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 LBRQ14739 615 aaKnown RBP8.17□□□□□ -1.1
CD44-232ENST00000531118 PTPN20Q4JDL3 420 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 CFAP58Q5T655 872 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 MANEALQ5VSG8 457 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 BRAT1Q6PJG6 821 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 LIPIQ6XZB0 460 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 NLRP14Q86W24 1093 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 RASGRP3Q8IV61 690 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 PASD1Q8IV76 773 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 SMYD4Q8IYR2 804 aaPredicted RBP8.17□□□□□ -1.1
CD44-232ENST00000531118 FDCSPQ8NFU4 85 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 LMO3Q8TAP4 145 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 CASKIN2Q8WXE0 1202 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 NCSTNQ92542 709 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 CCDC47Q96A33 483 aaKnown RBP8.17□□□□□ -1.1
CD44-232ENST00000531118 NUS1Q96E22 293 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 OR2M4Q96R27 311 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 ACP6Q9NPH0 428 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 DNAI1Q9UI46 699 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 HPCAL4Q9UM19 191 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 G3BP2Q9UN86 482 aaKnown RBP8.17□□□□□ -1.1
CD44-232ENST00000531118 PLEKHM1Q9Y4G2 1056 aa8.17□□□□□ -1.1
CD44-232ENST00000531118 GPC6Q9Y625 555 aaPredicted RBP8.17□□□□□ -1.1
CD44-232ENST00000531118 E2F3O00716 465 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 PMM2O15305 246 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 LRRTM2O43300 516 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 BUB1O43683 1085 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 BUB1BO60566 1050 aaPredicted RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 MT-ND3P03897 115 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 PFKFB1P16118 471 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 MSX1P28360 303 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 ERCC5P28715 1186 aaPredicted RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 ME1P48163 572 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 NDST2P52849 883 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 CDK3Q00526 305 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 SLC6A3Q01959 620 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 NFATC2Q13469 925 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 TBCELQ5QJ74 424 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 NUP210LQ5VU65 1888 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 PNCKQ6P2M8 343 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 DOK6Q6PKX4 331 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 DPPA4Q7L190 304 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 SYVN1Q86TM6 617 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 ZNF354CQ86Y25 554 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 DNAAF5Q86Y56 855 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 CISD2Q8N5K1 135 aaKnown RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 ST6GALNAC3Q8NDV1 305 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 HCAR2Q8TDS4 363 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 UBE2Q2Q8WVN8 375 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 ZNF606Q8WXB4 792 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 NANOS1Q8WY41 292 aaKnown RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 NT5C3BQ969T7 300 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 ELMO2Q96JJ3 720 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 OR6C1Q96RD1 312 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 TEX101Q9BY14 249 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 TRIM8Q9BZR9 551 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 MAGEH1Q9H213 219 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 SUV39H2Q9H5I1 410 aa8.16□□□□□ -1.1
CD44-232ENST00000531118 STN1Q9H668 368 aaKnown RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 UPF2Q9HAU5 1272 aaKnown RBP8.16□□□□□ -1.1
CD44-232ENST00000531118 TMEM248Q9NWD8 314 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms