RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RAB27B	O00194	218 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	VWA5A	O00534	786 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	E2F3	O00716	465 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ACOX3	O15254	700 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	SLC7A4	O43246	635 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ZBTB43	O43298	467 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	RASAL1	O95294	804 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	NUDT3	O95989	172 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	HNRNPCL4	P0DMR1	293 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	MYL4	P12829	197 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ITGA2	P17301	1181 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ITGAX	P20702	1163 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	CYP3A5	P20815	502 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	GPD1	P21695	349 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	FGFR2	P21802	821 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	GSTM2	P28161	218 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	UQCRC1	P31930	480 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	VHL	P40337	213 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	STT3A	P46977	705 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ALDH5A1	P51649	535 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	AP2S1	P53680	142 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	AP1S2	P56377	157 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	TSPAN5	P62079	268 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	PSMC5	P62195	406 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	VSNL1	P62760	191 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ZNF33B	Q06732	778 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ENPEP	Q07075	957 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	LGALS3BP	Q08380	585 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	DHX34	Q14147	1143 aa	Known RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	CLCA4	Q14CN2	919 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	EZH2	Q15910	746 aa	Known RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	STX1A	Q16623	288 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	TMEM63B	Q5T3F8	832 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	KCTD16	Q68DU8	428 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	KLHL35	Q6PF15	583 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	C11orf88	Q6PI97	169 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	PIK3AP1	Q6ZUJ8	805 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	C15orf52	Q6ZUT6	534 aa	Known RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110		Q6ZWC4	215 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	PLEKHM3	Q6ZWE6	761 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	TMTC3	Q6ZXV5	915 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	PTF1A	Q7RTS3	328 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	GPR141	Q7Z602	305 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ADGRG3	Q86Y34	549 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	CAMK1D	Q8IU85	385 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	TBC1D21	Q8IYX1	336 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	FAM9C	Q8IZT9	166 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	NATD1	Q8N6N6	113 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	FANCB	Q8NB91	859 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	PCYOX1L	Q8NBM8	494 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	DNAJB14	Q8TBM8	379 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	GANC	Q8TET4	914 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	AEN	Q8WTP8	325 aa	Known RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	NOC3L	Q8WTT2	800 aa	Known RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	CHPT1	Q8WUD6	406 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	SEPT1	Q8WYJ6	367 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	EDC3	Q96F86	508 aa	Known RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	LTV1	Q96GA3	475 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ZNF333	Q96JL9	665 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	RANBP9	Q96S59	729 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	NEURL2	Q9BR09	285 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	C17orf80	Q9BSJ5	609 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	AZI2	Q9H6S1	392 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	SP140L	Q9H930	580 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	HEYL	Q9NQ87	328 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	RASSF1	Q9NS23	344 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	UBA2	Q9UBT2	640 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	MTMR6	Q9Y217	621 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	MTF2	Q9Y483	593 aa	Predicted RBP	5.67	□□□□□ -1.5
CD44-231	ENST00000531110	ABCC3	O15438	1527 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	WDR19	Q8NEZ3	1342 aa		5.67	□□□□□ -1.5
CD44-231	ENST00000531110	TRPM1	Q7Z4N2	1603 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	RIMS2	Q9UQ26	1411 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	SIGLEC16	A6NMB1	481 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110		H0YIZ8	118 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	NDUFS8	O00217	210 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	RGS10	O43665	173 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	ACSL4	O60488	711 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	C1QL1	O75973	258 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	NPS	P0C0P6	89 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	EBLN1	P0CF75	366 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	ATP6V1B1	P15313	513 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	IDUA	P35475	653 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	MSH2	P43246	934 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	MTHFS	P49914	203 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	IST1	P53990	364 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	VCP	P55072	806 aa	Known RBP	5.66	□□□□□ -1.5
CD44-231	ENST00000531110	EEFSEC	P57772	596 aa	Known RBP	5.66	□□□□□ -1.5
CD44-231	ENST00000531110	TIRAP	P58753	221 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	CREB5	Q02930	508 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	KDSR	Q06136	332 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	BAMBI	Q13145	260 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	NCF4	Q15080	339 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	CYTH1	Q15438	398 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	NPTX1	Q15818	432 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	PTCHD3	Q3KNS1	767 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	GALNTL6	Q49A17	601 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	SETMAR	Q53H47	684 aa	Predicted RBP	5.66	□□□□□ -1.5
CD44-231	ENST00000531110	IGSF11	Q5DX21	431 aa		5.66	□□□□□ -1.5
CD44-231	ENST00000531110	FBXO48	Q5FWF7	155 aa		5.66	□□□□□ -1.5

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