RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TRPV1Q8NER1 839 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 TRPC4APQ8TEL6 797 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 SLC45A3Q96JT2 553 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 ADAM2Q99965 735 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 POPDC3Q9HBV1 291 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 SLC52A3Q9NQ40 469 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 AGPAT4Q9NRZ5 378 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 GMIPQ9P107 970 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 RSL24D1Q9UHA3 163 aaKnown RBP19.2■□□□□ 0.66
VPS28-213ENST00000530983 PCDHB8Q9UN66 801 aa19.2■□□□□ 0.66
VPS28-213ENST00000530983 DHRS12A0PJE2 317 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 CLASP2O75122 1294 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 DUSP11O75319 330 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 TBX18O95935 607 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 LINC00032P0C843 101 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 PIRTP0C851 137 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 HGFP14210 728 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 PAX3P23760 479 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 IL10RBQ08334 325 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 GALNT3Q14435 633 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 RAP1GAP2Q684P5 730 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 DUS1LQ6P1R4 473 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 CBR4Q8N4T8 237 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 TUBGCP3Q96CW5 907 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 BTRCQ9Y297 605 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 FAM149AA5PLN7 773 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 RPP40O75818 363 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 GNAO1P09471 354 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 PRSS56P0CW18 603 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 HOXB8P17481 243 aaPredicted RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 RPL10P27635 214 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 GRK4P32298 578 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 TUBA4AP68366 448 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 SERINC3Q13530 473 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 POLD3Q15054 466 aaPredicted RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 INTS11Q5TA45 600 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 LCN8Q6JVE9 175 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 MFSD2AQ8NA29 543 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 HM13Q8TCT9 377 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 DIS3LQ8TF46 1054 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 PEX13Q92968 403 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 PHF12Q96QT6 1004 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 TRIM8Q9BZR9 551 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 TFB2MQ9H5Q4 396 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 CLK4Q9HAZ1 481 aaKnown RBP19.19■□□□□ 0.66
VPS28-213ENST00000530983 SMOXQ9NWM0 555 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 SQORQ9Y6N5 450 aa19.19■□□□□ 0.66
VPS28-213ENST00000530983 KPNA6O60684 536 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 RAMP2O60895 175 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 GFAPP14136 432 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 LBPP18428 481 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 OXTRP30559 389 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 ACVRL1P37023 503 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 CDK9P50750 372 aaKnown RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 STC1P52823 247 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 CDH15P55291 814 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 DCTN2Q13561 401 aaKnown RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 PACRGLQ8N7B6 248 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 ABTB1Q969K4 478 aaPredicted RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 LRRC58Q96CX6 371 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 FEM1CQ96JP0 617 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 BTN2A3PQ96KV6 586 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 AARSD1Q9BTE6 412 aaKnown RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 TRIM15Q9C019 465 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 POLR1EQ9GZS1 481 aaKnown RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 CATSPERZQ9NTU4 200 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 ACTR3BQ9P1U1 418 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 ZFC3H1O60293 1989 aaKnown RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 FGF1P05230 155 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 HLA-DPA1P20036 260 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 TPP2P29144 1249 aaPredicted RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 PBX3P40426 434 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 PLOD1Q02809 727 aaPredicted RBP19.18■□□□□ 0.66
VPS28-213ENST00000530983 BNIP2Q12982 314 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 INPP5AQ14642 412 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 BLOC1S3Q6QNY0 202 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 CAMK1DQ8IU85 385 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 ATP6V0D2Q8N8Y2 350 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 OR4L1Q8NH43 312 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.18■□□□□ 0.66
VPS28-213ENST00000530983 IKZF3Q9UKT9 509 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 SLC8A2Q9UPR5 921 aa19.18■□□□□ 0.66
VPS28-213ENST00000530983 ARPC2O15144 300 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 MAGEB3O15480 346 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 EEF1DP29692 281 aaKnown RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 DIO3P55073 304 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 CLCQ05315 142 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 ILF2Q12905 390 aaKnown RBP19.17■□□□□ 0.66
VPS28-213ENST00000530983 LCP2Q13094 533 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 LPIN1Q14693 890 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 FBXO48Q5FWF7 155 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 MIB1Q86YT6 1006 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 BRSK1Q8TDC3 778 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 MYEOVQ96EZ4 313 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 FBXO44Q9H4M3 255 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 MED16Q9Y2X0 877 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 PCDHA9Q9Y5H5 950 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 BRCA2P51587 3418 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 TPST1O60507 370 aa19.17■□□□□ 0.66
VPS28-213ENST00000530983 KERAO60938 352 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms