RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 GJC3Q8NFK1 279 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 SEMA6DQ8NFY4 1073 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 OR14L1PQ8NHC6 308 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 RNF183Q96D59 192 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 NAF1Q96HR8 494 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 HARBI1Q96MB7 349 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 CFAP57Q96MR6 1250 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 TMEM47Q9BQJ4 181 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 NAA11Q9BSU3 229 aaPredicted RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 MMTAG2Q9BU76 263 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 C1QTNF5Q9BXJ0 243 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 TKTL2Q9H0I9 626 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 DBNDD1Q9H9R9 158 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 MAGEE1Q9HCI5 957 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 MED4Q9NPJ6 270 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 PAPOLBQ9NRJ5 636 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 PDRG1Q9NUG6 133 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 FLRT1Q9NZU1 646 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 C6orf203Q9P0P8 240 aaPredicted RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 EPS15L1Q9UBC2 864 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 TUBE1Q9UJT0 475 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 UTS2RQ9UKP6 389 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 PLAGL1Q9UM63 463 aa3.34□□□□□ -1.87
CD44-229ENST00000528672 PA2G4Q9UQ80 394 aaKnown RBP3.34□□□□□ -1.87
CD44-229ENST00000528672 PIK3R4Q99570 1358 aa3.34□□□□□ -1.88
CD44-229ENST00000528672 UNC13AQ9UPW8 1703 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 LOC102723996A0A087X1L8 192 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 GPR75-ASB3A0A0A6YYF3 556 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 A0A0B4J203 849 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 A0A1B0GVM2 712 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 C2CD4BA6NLJ0 364 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 A6NNC1 897 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 HSPB2A8KAH6 182 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 AKR1B15C9JRZ8 316 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 H3BQ06 376 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 ZC3H11AO75152 810 aaKnown RBP eCLIP3.33□□□□□ -1.88
CD44-229ENST00000528672 TADA2AO75478 443 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 JRKO75564 520 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 NEURL1O76050 574 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 RNF8O76064 485 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 KIAA0754O94854 1291 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 HIST1H2ABP04908 130 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 PRKCGP05129 697 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 CHRM5P08912 532 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 ETFAP13804 333 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 MMP9P14780 707 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 CTPS1P17812 591 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SRD5A1P18405 259 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 ANXA7P20073 488 aaKnown RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 HIST1H2ADP20671 130 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SP100P23497 879 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 TLX1P31314 330 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 RFC1P35251 1148 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 SLC16A2P36021 539 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 ATP6V1E1P36543 226 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 CCR3P51677 355 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SLC12A2P55011 1212 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 PMPCAQ10713 525 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 FOXF2Q12947 444 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 IL11RAQ14626 422 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SLMAPQ14BN4 828 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 TNIP1Q15025 636 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 HSPB2Q16082 182 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SHROOM1Q2M3G4 852 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 CDONQ4KMG0 1287 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SOWAHCQ53LP3 525 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 ALG10Q5BKT4 473 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 ALG10BQ5I7T1 473 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 LRIF1Q5T3J3 769 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 ASPHD1Q5U4P2 390 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 DAB2IPQ5VWQ8 1189 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 CAVIN1Q6NZI2 390 aaKnown RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 FBXO46Q6PJ61 603 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 FIP1L1Q6UN15 594 aaKnown RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 HIST3H2AQ7L7L0 130 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 CATSPER4Q7RTX7 472 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 MTERF4Q7Z6M4 381 aaKnown RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 GLRX5Q86SX6 157 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SERPINA11Q86U17 422 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 NOXA1Q86UR1 476 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 GPSM1Q86YR5 675 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 EPHX4Q8IUS5 362 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 ARID3BQ8IVW6 561 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 UNC45BQ8IWX7 931 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 MCEMP1Q8IX19 187 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SRRM1Q8IYB3 904 aaKnown RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 CCDC170Q8IYT3 715 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SCYL3Q8IZE3 742 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 ADGRF4Q8IZF3 695 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 MMP21Q8N119 569 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 GUF1Q8N442 669 aaKnown RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 CARNMT1Q8N4J0 409 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 DPP10Q8N608 796 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 CMASQ8NFW8 434 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 HUS1BQ8NHY5 278 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 OSR1Q8TAX0 266 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 PTPMT1Q8WUK0 201 aaPredicted RBP3.33□□□□□ -1.88
CD44-229ENST00000528672 FAM162AQ96A26 154 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 FBXL8Q96CD0 374 aa3.33□□□□□ -1.88
CD44-229ENST00000528672 SLITRK1Q96PX8 696 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms