RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GPR15P49685 360 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC14A2Q15849 920 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 TIGD2Q4W5G0 525 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 ARTNQ5T4W7 220 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 LYSMD3Q7Z3D4 306 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 GPR180Q86V85 440 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MFSD2AQ8NA29 543 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 B3GALT6Q96L58 329 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 SMIM14Q96QK8 99 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 OSBPL6Q9BZF3 934 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 TRIM15Q9C019 465 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 AP5M1Q9H0R1 490 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MFSD1Q9H3U5 465 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 CLEC11AQ9Y240 323 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 ACTL7AQ9Y615 435 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 AGTR2P50052 363 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 UFM1P61960 85 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 CLCQ05315 142 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 EFEMP1Q12805 493 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 EIF4EBP2Q13542 120 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 TSNQ15631 228 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 PLA2G4EQ3MJ16 856 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 PGBD5Q8N414 524 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MINDY1Q8N5J2 469 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 RNF145Q96MT1 663 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 VPS45Q9NRW7 570 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 EVLQ9UI08 416 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 TSC2P49815 1807 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 CDC7O00311 574 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 ACOX3O15254 700 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 CD247P20963 164 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MYF6P23409 242 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 VARSP26640 1264 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 ATP6V0D1P61421 351 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 KCTD21Q4G0X4 260 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 LDLRAD1Q5T700 205 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 INTS11Q5TA45 600 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 RAP1GAP2Q684P5 730 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 TMEM214Q6NUQ4 689 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 UGT3A1Q6NUS8 523 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 PHYKPLQ8IUZ5 450 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MS4A4AQ96JQ5 239 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MYRFLQ96LU7 910 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 SMOC2Q9H3U7 446 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 ALG2Q9H553 416 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 IKZF3Q9UKT9 509 aa9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 MAGED1Q9Y5V3 778 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-215ENST00000512632 TSPAN3O60637 253 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 RHOBTB1O94844 696 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 ZNF37AP17032 561 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 HOXC13P31276 330 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 CCT8P50990 548 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 PSMD7P51665 324 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 TIAL1Q01085 375 aaKnown RBP eCLIP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 YWHAHQ04917 246 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 POLD3Q15054 466 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 SLC36A3Q495N2 470 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 TBPL2Q6SJ96 375 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 FBXO39Q8N4B4 442 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 NAT16Q8N8M0 369 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 FNDC8Q8TC99 324 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 GIPC3Q8TF64 312 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 KCTD14Q9BQ13 255 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 NPLQ9BXD5 320 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 PLGRKTQ9HBL7 147 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 SDR39U1Q9NRG7 319 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 INTS7Q9NVH2 962 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 CHCHD3Q9NX63 227 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 GALPQ9UBC7 116 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 ABCD2Q9UBJ2 740 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 RNF112Q9ULX5 631 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 OAS3Q9Y6K5 1087 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 BBIP1A8MTZ0 92 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 HAS3O00219 553 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 HSD17B1P14061 328 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 ACVRL1P37023 503 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 ATP4BP51164 291 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 KCNK10P57789 538 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 TSPY1Q01534 308 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 BNIP3Q12983 259 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 LCN8Q6JVE9 175 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 ELMSAN1Q6PJG2 1045 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 BLOC1S3Q6QNY0 202 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 KCTD8Q6ZWB6 473 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 DCP1BQ8IZD4 617 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 ARRDC2Q8TBH0 407 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 IGSF8Q969P0 613 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 TMEM125Q96AQ2 219 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 RPF2Q9H7B2 306 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 CIDEBQ9UHD4 219 aa9.21□□□□□ -0.93
LIMCH1-215ENST00000512632 MROH6A6NGR9 719 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 UNCXA6NJT0 531 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 FGF4P08620 206 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 RAB39AQ14964 217 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 SLC39A12Q504Y0 691 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 PYCR3Q53H96 274 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 AARS2Q5JTZ9 985 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ANKS6Q68DC2 871 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 MRNIPQ6NTE8 343 aa9.21□□□□□ -0.94
LIMCH1-215ENST00000512632 ALDH16A1Q8IZ83 802 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms