RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 FBXO39Q8N4B4 442 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 NKAPQ8N5F7 415 aaKnown RBP12.99□□□□□ -0.33
GARNL3-220ENST00000496711 ARL14EPQ8N8R7 260 aaPredicted RBP12.99□□□□□ -0.33
GARNL3-220ENST00000496711 HMGCLL1Q8TB92 370 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 ADAMTS19Q8TE59 1207 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 AUTS2Q8WXX7 1259 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 VWCEQ96DN2 955 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 BIRC8Q96P09 236 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 CYP2S1Q96SQ9 504 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 NPAS2Q99743 824 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 MRPL1Q9BYD6 325 aaKnown RBP12.99□□□□□ -0.33
GARNL3-220ENST00000496711 VCX3BQ9H321 246 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 UTP6Q9NYH9 597 aaKnown RBP12.99□□□□□ -0.33
GARNL3-220ENST00000496711 SPG21Q9NZD8 308 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 BCAP29Q9UHQ4 241 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 FCF1Q9Y324 198 aaKnown RBP12.99□□□□□ -0.33
GARNL3-220ENST00000496711 OR51B4Q9Y5P0 310 aa12.99□□□□□ -0.33
GARNL3-220ENST00000496711 SYCE1LA8MT33 242 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 GFRA2O00451 464 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 CFLARO15519 480 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 GREM1O60565 184 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 CDK14O94921 469 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 FGF4P08620 206 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 CD9P21926 228 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 DPP6P42658 865 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 SH3BP2P78314 561 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 CDC16Q13042 620 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 STX5Q13190 355 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 FLOT2Q14254 428 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 UGT3A2Q3SY77 523 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 PABPC1LQ4VXU2 614 aaKnown RBP12.98□□□□□ -0.33
GARNL3-220ENST00000496711 ZRANB3Q5FWF4 1079 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 KANK2Q63ZY3 851 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 RNF111Q6ZNA4 994 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 LARP4Q71RC2 724 aaKnown RBP eCLIP12.98□□□□□ -0.33
GARNL3-220ENST00000496711 FAM217AQ8IXS0 508 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 PIANPQ8IYJ0 282 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 CMTR2Q8IYT2 770 aaKnown RBP12.98□□□□□ -0.33
GARNL3-220ENST00000496711 USP13Q92995 863 aaPredicted RBP12.98□□□□□ -0.33
GARNL3-220ENST00000496711 TMA16Q96EY4 203 aaKnown RBP12.98□□□□□ -0.33
GARNL3-220ENST00000496711 MYO19Q96H55 970 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 ECSITQ9BQ95 431 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 IL21Q9HBE4 155 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 BPIFA1Q9NP55 256 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 MID1IP1Q9NPA3 183 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 TRMT6Q9UJA5 497 aaKnown RBP12.98□□□□□ -0.33
GARNL3-220ENST00000496711 PACSIN3Q9UKS6 424 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 MAFFQ9ULX9 164 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 ZNF711Q9Y462 761 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 CPQQ9Y646 472 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 COMMD10Q9Y6G5 202 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 ANKRD12Q6UB98 2062 aa12.98□□□□□ -0.33
GARNL3-220ENST00000496711 ABHD14A-ACY1A0A1B0GW23 586 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 CARNS1A5YM72 827 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 NPEPPSL1A6NEC2 478 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 LRRC14BA6NHZ5 514 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 H3BNX3 289 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 AZIN1O14977 448 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 FZD6O60353 706 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 CLASP2O75122 1294 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 NIPSNAP2O75323 286 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 ECI2O75521 394 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 XRCC1P18887 633 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 ME2P23368 584 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 EEF1DP29692 281 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 MNX1P50219 401 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 CLCN4P51793 760 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 PKNOX1P55347 436 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 STX1BP61266 288 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 AP1S1P61966 158 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 DEFB103AP81534 67 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 LCP2Q13094 533 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 CEACAM7Q14002 265 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 TSNQ15631 228 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 GEN1Q17RS7 908 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 AGKQ53H12 422 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 CTSL3PQ5NE16 218 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 ATXN7L2Q5T6C5 722 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 TXNDC8Q6A555 127 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 REP15Q6BDI9 236 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 WFDC5Q8TCV5 224 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 TWIST2Q8WVJ9 160 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 ALG14Q96F25 216 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 MRPL17Q9NRX2 175 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 DNMT3BQ9UBC3 853 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 LSM7Q9UK45 103 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 IKZF3Q9UKT9 509 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 ATP11BQ9Y2G3 1177 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 FNDC3AQ9Y2H6 1198 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 PKP3Q9Y446 797 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 PCDHB9Q9Y5E1 797 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 DNAJC15Q9Y5T4 150 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 STX16-NPEPL1H3BU86 382 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 BTN3A1O00481 513 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 STX16O14662 325 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 OR1I1O60431 355 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 SMNDC1O75940 238 aaKnown RBP eCLIP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 RPS17P08708 135 aaKnown RBP12.97□□□□□ -0.33
GARNL3-220ENST00000496711 HDCP19113 662 aa12.97□□□□□ -0.33
GARNL3-220ENST00000496711 NAA20P61599 178 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms