RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CYP4F2P78329 520 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 RNF220Q5VTB9 566 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 TRIQKQ629K1 86 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 ALKBH2Q6NS38 261 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 ARCQ7LC44 396 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 DHDDSQ86SQ9 333 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 TNS4Q8IZW8 715 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 C4orf32Q8N8J7 132 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 DPEP3Q9H4B8 488 aa13.12□□□□□ -0.31
PTPRF-215ENST00000496447 NDST3O95803 873 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 HNRNPLP14866 589 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ACLYP53396 1101 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 LILRA4P59901 499 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 GNA12Q03113 381 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 CCDC185Q8N715 623 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 OR4A15Q8NGL6 344 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PLD4Q96BZ4 506 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PCDHB18PQ96TA0 734 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 TRIM8Q9BZR9 551 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 C3orf14Q9HBI5 128 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 MRTO4Q9UKD2 239 aaKnown RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 TRIM43BA6NCK2 446 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 SLC38A8A6NNN8 435 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 SERPINB7O75635 380 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PTPN9P43378 593 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 DGKGP49619 791 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 RAB15P59190 212 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ILF3Q12906 894 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 NOMO1Q15155 1222 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 NDUFA9Q16795 377 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 TRIM40Q6P9F5 258 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 OFCC1Q8IZS5 231 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 C2orf73Q8N5S3 287 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ZBTB2Q8N680 514 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 C2orf15Q8WU43 125 aaKnown RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 S100ZQ8WXG8 99 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ACSS3Q9H6R3 686 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 WNT7AO00755 349 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 BUD31P41223 144 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ITGA1P56199 1179 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 LPIN1Q14693 890 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 TCAIMQ8N3R3 496 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ITCHQ96J02 903 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 HNRNPABQ99729 332 aaKnown RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PRRG4Q9BZD6 226 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 POLMQ9NP87 494 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ADGRB2O60241 1585 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 STX11O75558 287 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 KRT36O76013 467 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PDE9AO76083 593 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PGM3O95394 542 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ETS2P15036 469 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 MRPS22P82650 360 aaKnown RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 CACNG1Q06432 222 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 AUHQ13825 339 aaKnown RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 NEDD8Q15843 81 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 LIN52Q52LA3 116 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 KLHL12Q53G59 568 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 TMPRSS11BQ86T26 416 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 SMYD1Q8NB12 490 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 QKIQ96PU8 341 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 C6orf62Q9GZU0 229 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 SORCS3Q9UPU3 1222 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PRKG2Q13237 762 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 UBXN2BQ14CS0 331 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PDZK1Q5T2W1 519 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 AAGABQ6PD74 315 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF662Q6ZS27 426 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ZNF671Q8TAW3 534 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 TNFRSF25Q93038 417 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 COX4I2Q96KJ9 171 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 PWWP2AQ96N64 755 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 GINS4Q9BRT9 223 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 REXO4Q9GZR2 422 aaKnown RBP13.11□□□□□ -0.31
PTPRF-215ENST00000496447 CAB39LQ9H9S4 337 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 ELOVL2Q9NXB9 296 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 CD84Q9UIB8 345 aa13.11□□□□□ -0.31
PTPRF-215ENST00000496447 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 TCRBV9S1A1TA0A576 114 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SLC28A2O43868 658 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ENTPD5O75356 428 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 POP4O95707 220 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 PKMP14618 531 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 GALK1P51570 392 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 MANFP55145 182 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 CCL14Q16627 93 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 NRSN1Q8IZ57 195 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 PHF10Q8WUB8 498 aaKnown RBP13.1□□□□□ -0.31
PTPRF-215ENST00000496447 PLEKHG4BQ96PX9 1271 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 SLC38A2Q96QD8 506 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 MCMBPQ9BTE3 642 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 FNDC11Q9BVV2 318 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 FAM83DQ9H4H8 585 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 NMUR1Q9HB89 426 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 MCIDASD6RGH6 385 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 RFXANKO14593 260 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 PIAS1O75925 651 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ALAS2P22557 587 aa13.1□□□□□ -0.31
PTPRF-215ENST00000496447 ITPKBP27987 946 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms