RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CLEC4EQ9ULY5 219 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 FNDC3AQ9Y2H6 1198 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 ZNF510Q9Y2H8 683 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 PGLSO95336 258 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 PKMP14618 531 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 ARSAP15289 507 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 VHLP40337 213 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 ERFP50548 548 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 ATP6V0D1P61421 351 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 XIAPP98170 497 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 TAF11Q15544 211 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 PFKFB4Q16877 469 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 ARMC12Q5T9G4 340 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 FAM219BQ5XKK7 198 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 RETSATQ6NUM9 610 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 KIRREL3Q8IZU9 778 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 FBXW8Q8N3Y1 598 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 PIH1D2Q8WWB5 315 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 EID2BQ96D98 161 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 RSRC1Q96IZ7 334 aaKnown RBP21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 SLC30A3Q99726 388 aa21.01■□□□□ 0.95
CCDC88B-208ENST00000492980 PFDN6O15212 129 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 SIX3O95343 332 aaPredicted RBP21■□□□□ 0.95
CCDC88B-208ENST00000492980 C8AP07357 584 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 GJA1P17302 382 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 CTPS1P17812 591 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 CLEC6AQ6EIG7 209 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 LRRC74BQ6ZQY2 392 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 LYSMD3Q7Z3D4 306 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 RAB44Q7Z6P3 723 aaPredicted RBP21■□□□□ 0.95
CCDC88B-208ENST00000492980 CAMK1DQ8IU85 385 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 TMEM199Q8N511 208 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 OR6K2Q8NGY2 324 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 STAG3L4Q8TBR4 150 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 RCN3Q96D15 328 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 MAGEE1Q9HCI5 957 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 PLK2Q9NYY3 685 aa21■□□□□ 0.95
CCDC88B-208ENST00000492980 TRAV19A0A0A6YYK7 116 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 LRRC14BA6NHZ5 514 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 NIPSNAP2O75323 286 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 VPS26AO75436 327 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 PYGLP06737 847 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 ALPIP09923 528 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 CD9P21926 228 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 GJA8P48165 433 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 CLCN4P51793 760 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 MTTPP55157 894 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 CDH13P55290 713 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 LMAN2Q12907 356 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 MPPE1Q53F39 396 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 AARS2Q5JTZ9 985 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 MPP7Q5T2T1 576 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 CYHR1Q6ZMK1 362 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 HPS6Q86YV9 775 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 EFCAB3Q8N7B9 438 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 KYQ8NBH2 561 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 USP13Q92995 863 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 ACDQ96AP0 544 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 NMRK1Q9NWW6 199 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 RNF112Q9ULX5 631 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 PKP3Q9Y446 797 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 A0A1W2PRU2 124 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 GFAPP14136 432 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 ANPEPP15144 967 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 TSNQ15631 228 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 ZRSR2Q15696 482 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 PPP1R3AQ16821 1122 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 C16orf89Q6UX73 402 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 TPGS1Q6ZTW0 290 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 CCDC149Q6ZUS6 474 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 DSELQ8IZU8 1212 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 NKAPQ8N5F7 415 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 CCDC124Q96CT7 223 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 ASB2Q96Q27 587 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 GPR63Q9BZJ6 419 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 EVLQ9UI08 416 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 ANGPTL2Q9UKU9 493 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 POMPQ9Y244 141 aa20.99■□□□□ 0.95
CCDC88B-208ENST00000492980 SUPT3HB4E1H0 165 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CDC7O00311 574 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 GPR39O43194 453 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 FKBP6O75344 327 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 SUPT3HO75486 399 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CDK14O94921 469 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CXCL14O95715 111 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 HMGCLP35914 325 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 AP2B1P63010 937 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 SH3BP2P78314 561 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 CCNIQ14094 377 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 UGT3A2Q3SY77 523 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 FIBCD1Q8N539 461 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 KLHL23Q8NBE8 558 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 SIDT2Q8NBJ9 832 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 GIMAP7Q8NHV1 300 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 PRPF19Q9UMS4 504 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 NVLO15381 856 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 ECI2O75521 394 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 TSPAN12O95859 305 aa20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 HSPA1AP0DMV8 641 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-208ENST00000492980 HSPA1BP0DMV9 641 aaKnown RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms