RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 GSDMCQ9BYG8 508 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 SYNDIG1Q9H7V2 258 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 UBP1Q9NZI7 540 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 CNOT6Q9ULM6 557 aaKnown RBP24.85■■□□□ 1.57
HMGN1-217ENST00000489072 PLEKHM1Q9Y4G2 1056 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 PCDHA3Q9Y5H8 950 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 ENTPD2Q9Y5L3 495 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 SCN8AQ9UQD0 1980 aa24.85■■□□□ 1.57
HMGN1-217ENST00000489072 PMPCBO75439 489 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 NAP1L1P55209 391 aaKnown RBP24.84■■□□□ 1.57
HMGN1-217ENST00000489072 CCL7P80098 99 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 CTBSQ01459 385 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 ILF3Q12906 894 aaKnown RBP eCLIP24.84■■□□□ 1.57
HMGN1-217ENST00000489072 HLTFQ14527 1009 aaKnown RBP eCLIP24.84■■□□□ 1.57
HMGN1-217ENST00000489072 C14orf28Q4W4Y0 310 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 CERCAMQ5T4B2 595 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 LRRC57Q8N9N7 239 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 OR6C4Q8NGE1 309 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 WDR48Q8TAF3 677 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 CCHCR1Q8TD31 782 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 CALR3Q96L12 384 aaKnown RBP24.84■■□□□ 1.57
HMGN1-217ENST00000489072 FAM83DQ9H4H8 585 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 PKD2L2Q9NZM6 624 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 TAAR2Q9P1P5 351 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 SHOC2Q9UQ13 582 aa24.84■■□□□ 1.57
HMGN1-217ENST00000489072 OAS3Q9Y6K5 1087 aaKnown RBP24.84■■□□□ 1.57
HMGN1-217ENST00000489072 A0A087WV48 116 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 A0A1W2PQM1 296 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 FADS2P1A8MWK0 482 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 FGF1P05230 155 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 NFKB1P19838 968 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 CDC25BP30305 580 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 GABREP78334 506 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 SPIDRQ14159 915 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 MARK2Q7KZI7 788 aaKnown RBP24.83■■□□□ 1.57
HMGN1-217ENST00000489072 ZNF567Q8N184 647 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 SPC24Q8NBT2 197 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 HNRNPLLQ8WVV9 542 aaKnown RBP24.83■■□□□ 1.57
HMGN1-217ENST00000489072 ZFYVE1Q9HBF4 777 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 MAGEE1Q9HCI5 957 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 RNF215Q9Y6U7 377 aa24.83■■□□□ 1.57
HMGN1-217ENST00000489072 A0A0U1RQJ8 604 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 GRID2IPA4D2P6 1211 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 RGSL1A5PLK6 1076 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 F5H423 210 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-217ENST00000489072 APOC4-APOC2K7ER74 178 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 MTSS1O43312 755 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 NDST3O95803 873 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 APOC2P02655 101 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 RPLP0P05388 317 aaKnown RBP24.82■■□□□ 1.56
HMGN1-217ENST00000489072 GLB1P16278 677 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 CTNNA2P26232 953 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 LSSP48449 732 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 MAZP56270 477 aaKnown RBP24.82■■□□□ 1.56
HMGN1-217ENST00000489072 COPS2P61201 443 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 COL28A1Q2UY09 1125 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 TBC1D25Q3MII6 688 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 PYCR3Q53H96 274 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 SLC30A9Q6PML9 568 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 KDELC1Q6UW63 502 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 C17orf82Q86X59 251 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-217ENST00000489072 KIAA1524Q8TCG1 905 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 HTR3CQ8WXA8 447 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 ALG3Q92685 438 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 DCBLD2Q96PD2 775 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 OR2M4Q96R27 311 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 C10orf88Q9H8K7 445 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 POLR1BQ9H9Y6 1135 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 KLHL8Q9P2G9 620 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-217ENST00000489072 APPL1Q9UKG1 709 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 LHX6Q9UPM6 363 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 ZNF711Q9Y462 761 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 SPO11Q9Y5K1 396 aa24.82■■□□□ 1.56
HMGN1-217ENST00000489072 PCYT1BQ9Y5K3 369 aaPredicted RBP24.82■■□□□ 1.56
HMGN1-217ENST00000489072 PTPRQQ9UMZ3 2332 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 PMS2P1A4D2B8 440 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 HACD1B0YJ81 288 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 ATP1A1P05023 1023 aaKnown RBP24.81■■□□□ 1.56
HMGN1-217ENST00000489072 EIF2S3P41091 472 aaKnown RBP24.81■■□□□ 1.56
HMGN1-217ENST00000489072 NOMO1Q15155 1222 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 TMC3Q7Z5M5 1100 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 B3GNT8Q7Z7M8 397 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 KIAA1328Q86T90 577 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 Q8N9G6 341 aaPredicted RBP24.81■■□□□ 1.56
HMGN1-217ENST00000489072 GPR26Q8NDV2 337 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 SNIP1Q8TAD8 396 aaKnown RBP24.81■■□□□ 1.56
HMGN1-217ENST00000489072 ZDHHC1Q8WTX9 485 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 PATE1Q8WXA2 126 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 OXNAD1Q96HP4 312 aaPredicted RBP24.81■■□□□ 1.56
HMGN1-217ENST00000489072 GFM1Q96RP9 751 aaKnown RBP24.81■■□□□ 1.56
HMGN1-217ENST00000489072 DESI2Q9BSY9 194 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 CDH19Q9H159 772 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 LRRN3Q9H3W5 708 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 LRIT1Q9P2V4 623 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 IMPACTQ9P2X3 320 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 TRIM10Q9UDY6 481 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 FAM153AQ9UHL3 310 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 SATB2Q9UPW6 733 aa24.81■■□□□ 1.56
HMGN1-217ENST00000489072 IGSF10Q6WRI0 2623 aa24.8■■□□□ 1.56
HMGN1-217ENST00000489072 CCDC66A2RUB6 948 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms