RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 AGAP14A8MT82 685 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 UPK3BL1B0FP48 263 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 UPK3BL2E5RIL1 263 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 NDUFS3O75489 264 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 SERPINE1P05121 402 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 C1SP09871 688 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 LTA4HP09960 611 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 CHRM1P11229 460 aaPredicted RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 NEFHP12036 1026 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF37AP17032 561 aaPredicted RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 SPAM1P38567 509 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 PTGER3P43115 390 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 GLRBP48167 497 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 KPNA2P52292 529 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 PTSQ03393 145 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 NFATC2Q13469 925 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 HNRNPA1L2Q32P51 320 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF805Q5CZA5 627 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 ARSIQ5FYB1 569 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 TECRLQ5HYJ1 363 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 CTSL3PQ5NE16 218 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 FAM151BQ6UXP7 276 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 CERS6Q6ZMG9 384 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 ZCCHC23Q6ZST2 131 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 SNX20Q7Z614 316 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 SPNS2Q8IVW8 549 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 SPATA6LQ8N4H0 392 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 GPR26Q8NDV2 337 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 C10orf82Q8WW14 230 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 MRPL57Q9BQC6 102 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 RPP25Q9BUL9 199 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 C20orf27Q9GZN8 174 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 P2RY12Q9H244 342 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 MRPL46Q9H2W6 279 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 CPSF2Q9P2I0 782 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 EPS15L1Q9UBC2 864 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 XPR1Q9UBH6 696 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 APPL1Q9UKG1 709 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 HCN2Q9UL51 889 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 FNDC3AQ9Y2H6 1198 aaKnown RBP9.4□□□□□ -0.91
SF3B1-211ENST00000487698 ARL2BPQ9Y2Y0 163 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 SLC30A1Q9Y6M5 507 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 XIRP2A4UGR9 3374 aa9.4□□□□□ -0.91
SF3B1-211ENST00000487698 TMEM265A0A087WTH1 108 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 GLYATL1P3A0A0U1RQE8 302 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 EDDM13A0A1B0GTR0 161 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 A8MX80 341 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 PFDN6O15212 129 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 OR1I1O60431 355 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 CCDC166P0CW27 439 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 RALBP11234 206 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF30P17039 623 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ITGALP20701 1170 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 GRK2P25098 689 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 GDI1P31150 447 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ARRB2P32121 409 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 CA5AP35218 305 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 SEMG2Q02383 582 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 SF3A3Q12874 501 aaKnown RBP eCLIP9.39□□□□□ -0.91
SF3B1-211ENST00000487698 OVGP1Q12889 678 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 STX3Q13277 289 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ADGRE1Q14246 886 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 CSHL1Q14406 222 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF234Q14588 700 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 FAM83EQ2M2I3 478 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 LRIT3Q3SXY7 679 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 FNDC3BQ53EP0 1204 aaKnown RBP9.39□□□□□ -0.91
SF3B1-211ENST00000487698 LRRC73Q5JTD7 316 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 C9orf64Q5T6V5 341 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 AGAP9Q5VTM2 703 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 YTHDF3Q7Z739 585 aaKnown RBP9.39□□□□□ -0.91
SF3B1-211ENST00000487698 STK40Q8N2I9 435 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF398Q8TD17 642 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 SUSD6Q92537 303 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 PLEKHG4BQ96PX9 1271 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ZNF395Q9H8N7 513 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-211ENST00000487698 THAP1Q9NVV9 213 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 OXSMQ9NWU1 459 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 COMMD10Q9Y6G5 202 aa9.39□□□□□ -0.91
SF3B1-211ENST00000487698 OAS3Q9Y6K5 1087 aaKnown RBP9.39□□□□□ -0.91
SF3B1-211ENST00000487698 ANHXE9PGG2 379 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 KAT7O95251 611 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ESR1P03372 595 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TROVE2P10155 538 aaKnown RBP eCLIP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 MYL2P10916 166 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 HLA-EP13747 358 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 PKMP14618 531 aaKnown RBP9.38□□□□□ -0.91
SF3B1-211ENST00000487698 TIMP2P16035 220 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 RPS3P23396 243 aaKnown RBP eCLIP9.38□□□□□ -0.914e-13■□□□□ 8.3
SF3B1-211ENST00000487698 FMO4P31512 558 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 VIPR1P32241 457 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 IFT88Q13099 833 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 HTR4Q13639 388 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ITGA9Q13797 1035 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 GRIN2CQ14957 1233 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ACAP2Q15057 778 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 ITPRIPL2Q3MIP1 535 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 GPR33Q49SQ1 333 aa9.38□□□□□ -0.91
SF3B1-211ENST00000487698 NAPRTQ6XQN6 538 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms