RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 NAALADL1Q9UQQ1 740 aa3.11□□□□□ -1.91
VPS50-216ENST00000484954 CTAGE9A4FU28 777 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 USP17L23D6RBM5 183 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 TSPAN4O14817 238 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 CTAGE8P0CG41 777 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 ABCD1P33897 745 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 CDKN1AP38936 164 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 MAPK9P45984 424 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 GABRB2P47870 512 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 PIP4K2AP48426 406 aaPredicted RBP3.1□□□□□ -1.91
VPS50-216ENST00000484954 TAS2R38P59533 333 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 NEXNQ0ZGT2 675 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 SREBF2Q12772 1141 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 ZNF234Q14588 700 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 CXorf66Q5JRM2 361 aaPredicted RBP3.1□□□□□ -1.91
VPS50-216ENST00000484954 OR7E24Q6IFN5 339 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 FAM171BQ6P995 826 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 DPPA4Q7L190 304 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 CTAGE4Q8IX94 777 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 CNTROBQ8N137 903 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 OR52I2Q8NH67 350 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 NOC3LQ8WTT2 800 aaKnown RBP3.1□□□□□ -1.91
VPS50-216ENST00000484954 SLC44A1Q8WWI5 657 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 ST8SIA4Q92187 359 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 IGSF8Q969P0 613 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 ZNF524Q96C55 264 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 NEUROD6Q96NK8 337 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 BRF2Q9HAW0 419 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 PPP1R14DQ9NXH3 145 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.1□□□□□ -1.91
VPS50-216ENST00000484954 ABI3Q9P2A4 366 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 CAMK2AQ9UQM7 478 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 TCF19Q9Y242 345 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 AAR2Q9Y312 384 aaKnown RBP3.1□□□□□ -1.91
VPS50-216ENST00000484954 CYP46A1Q9Y6A2 500 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 PTPRCP08575 1304 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 SMCHD1A6NHR9 2005 aa3.1□□□□□ -1.91
VPS50-216ENST00000484954 FAM72CH0Y354 149 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 DVL1O14640 695 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 SPINT2O43291 252 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 TGFB1I1O43294 461 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 EDIL3O43854 480 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 WDR1O75083 606 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 MLYCDO95822 493 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 LDLRP01130 860 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 HOXB5P09067 269 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 ICAM3P32942 547 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 CPOXP36551 454 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 APOBEC1P41238 236 aaKnown RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 PAFAH1B1P43034 410 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 DVL1P1P54792 670 aaPredicted RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 CLDN20P56880 219 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 RPL24P83731 157 aaKnown RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 FOXM1Q08050 763 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 BIRC3Q13489 604 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 DHX8Q14562 1220 aaKnown RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 DRAP1Q14919 205 aaPredicted RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 USP41Q3LFD5 358 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 FAM72AQ5TYM5 149 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 FRG2Q64ET8 278 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 ARHGAP17Q68EM7 881 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 SIGIRRQ6IA17 410 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 FAM72DQ6L9T8 149 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 ATG9AQ7Z3C6 839 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 FAM72BQ86X60 149 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 KRTAP7-1Q8IUC3 87 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 ESX1Q8N693 406 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 METTL27Q8N6F8 245 aaPredicted RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 OR14L1PQ8NHC6 308 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 PSPC1Q8WXF1 523 aaKnown RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 APBB2Q92870 758 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 LINGO1Q96FE5 620 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 NR1H4Q96RI1 486 aaPredicted RBP3.09□□□□□ -1.91
VPS50-216ENST00000484954 ACOX2Q99424 681 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 LITAFQ99732 161 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 LRRC1Q9BTT6 524 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 AGXT2Q9BYV1 514 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 GFRA4Q9GZZ7 299 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 SLC28A3Q9HAS3 691 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 VEZTQ9HBM0 779 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 ACSL5Q9ULC5 683 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 KLHL20Q9Y2M5 609 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 UTYO14607 1347 aa3.09□□□□□ -1.91
VPS50-216ENST00000484954 SNED1Q8TER0 1413 aa3.09□□□□□ -1.92
VPS50-216ENST00000484954 KIAA1210Q9ULL0 1709 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 FAM237AA0A1B0GTK4 181 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 C5orf60A6NFR6 353 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 LRRC53A6NM62 1247 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 PMS2P5A8MQ11 134 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 ZNHIT1O43257 154 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 KCNK5O95279 499 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 EPHA8P29322 1005 aaPredicted RBP3.08□□□□□ -1.92
VPS50-216ENST00000484954 DCTP40126 519 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 CCT5P48643 541 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 HARS2P49590 506 aaKnown RBP3.08□□□□□ -1.92
VPS50-216ENST00000484954 CTCFP49711 727 aaPredicted RBP3.08□□□□□ -1.92
VPS50-216ENST00000484954 NR0B1P51843 470 aaKnown RBP3.08□□□□□ -1.92
VPS50-216ENST00000484954 COG7P83436 770 aa3.08□□□□□ -1.92
VPS50-216ENST00000484954 TBX2Q13207 712 aaPredicted RBP3.08□□□□□ -1.92
VPS50-216ENST00000484954 CDONQ4KMG0 1287 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms