RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 FAM96AQ9H5X1 160 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 IL26Q9NPH9 171 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 ABCF3Q9NUQ8 709 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 DEC1Q9P2X7 70 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 XPR1Q9UBH6 696 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 COLQQ9Y215 455 aaPredicted RBP13.98□□□□□ -0.17
CLK3-204ENST00000483723 COL4A3Q01955 1670 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 MUC22E2RYF6 1773 aaPredicted RBP13.98□□□□□ -0.17
CLK3-204ENST00000483723 KIAA0754O94854 1291 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 DNAJB13P59910 316 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 RUNX3Q13761 415 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 GPR33Q49SQ1 333 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 HSF5Q4G112 596 aaPredicted RBP13.98□□□□□ -0.17
CLK3-204ENST00000483723 NAPRTQ6XQN6 538 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 SNX20Q7Z614 316 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 ISCA2Q86U28 154 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 PIM3Q86V86 326 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 SPATA6LQ8N4H0 392 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 FITM2Q8N6M3 262 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 SREK1Q8WXA9 508 aaKnown RBP13.98□□□□□ -0.17
CLK3-204ENST00000483723 NXPE3Q969Y0 559 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 ELSPBP1Q96BH3 223 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 SYTL2Q9HCH5 934 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 KCNK4Q9NYG8 393 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 TAS2R13Q9NYV9 303 aa13.98□□□□□ -0.17
CLK3-204ENST00000483723 OAS3Q9Y6K5 1087 aaKnown RBP13.98□□□□□ -0.17
CLK3-204ENST00000483723 UBA6A0AVT1 1052 aaPredicted RBP13.97□□□□□ -0.17
CLK3-204ENST00000483723 LEFTY1O75610 366 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 ESR1P03372 595 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 CTSLP07711 333 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 LAMP2P13473 410 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 CD1DP15813 335 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 TIMP2P16035 220 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 ZNF37AP17032 561 aaPredicted RBP13.97□□□□□ -0.17
CLK3-204ENST00000483723 LHCGRP22888 699 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 RPS3P23396 243 aaKnown RBP eCLIP13.97□□□□□ -0.171e-6■■□□□ 12.2
CLK3-204ENST00000483723 ATP5F1P24539 256 aaPredicted RBP13.97□□□□□ -0.17
CLK3-204ENST00000483723 CA5AP35218 305 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 SPAM1P38567 509 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 OPRD1P41143 372 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 ARFIP2P53365 341 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 CORO7P57737 925 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 ARSIQ5FYB1 569 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 CTSL3PQ5NE16 218 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 LYPLAL1Q5VWZ2 237 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 LRRC66Q68CR7 880 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 CES5AQ6NT32 575 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 SPNS2Q8IVW8 549 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 PAF1Q8N7H5 531 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 GBP7Q8N8V2 638 aaPredicted RBP13.97□□□□□ -0.17
CLK3-204ENST00000483723 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.97□□□□□ -0.177e-11■■■■■ 32
CLK3-204ENST00000483723 IL36AQ9UHA7 158 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 DCTN4Q9UJW0 460 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 PLA2G4CQ9UP65 541 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 RRP15Q9Y3B9 282 aaKnown RBP13.97□□□□□ -0.17
CLK3-204ENST00000483723 DENND4AQ7Z401 1863 aa13.97□□□□□ -0.17
CLK3-204ENST00000483723 OR1I1O60431 355 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 LYPLA1O75608 230 aaPredicted RBP13.96□□□□□ -0.17
CLK3-204ENST00000483723 DCTN3O75935 186 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 RHOBTB1O94844 696 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 CHRM1P11229 460 aaPredicted RBP13.96□□□□□ -0.17
CLK3-204ENST00000483723 PPARGP37231 505 aaPredicted RBP13.96□□□□□ -0.17
CLK3-204ENST00000483723 EIF2DP41214 584 aaKnown RBP13.96□□□□□ -0.17
CLK3-204ENST00000483723 ST8SIA6P61647 398 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 NFATC2Q13469 925 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 CHRNA6Q15825 494 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 SPRED3Q2MJR0 410 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 ZNF805Q5CZA5 627 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 ZDHHC20Q5W0Z9 365 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 KLC3Q6P597 504 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 CHRDL2Q6WN34 429 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 TAS2R42Q7RTR8 314 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 SERPINA9Q86WD7 417 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 CPA6Q8N4T0 437 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 GPR26Q8NDV2 337 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 PIWIL2Q8TC59 973 aaKnown RBP13.96□□□□□ -0.17
CLK3-204ENST00000483723 DTX3LQ8TDB6 740 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 SIKE1Q9BRV8 207 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 DRC3Q9H069 523 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 CCDC68Q9H2F9 335 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 MTG2Q9H4K7 406 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 ASB8Q9H765 288 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 B4GALT6Q9UBX8 382 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 HAO1Q9UJM8 370 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 MTF2Q9Y483 593 aaPredicted RBP13.96□□□□□ -0.17
CLK3-204ENST00000483723 PCDHB1Q9Y5F3 818 aa13.96□□□□□ -0.17
CLK3-204ENST00000483723 TRANK1O15050 2925 aa13.96□□□□□ -0.18
CLK3-204ENST00000483723 GLYATL1P3A0A0U1RQE8 302 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 PRMT5O14744 637 aaPredicted RBP13.95□□□□□ -0.18
CLK3-204ENST00000483723 PRAMEF1O95521 474 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 PYGLP06737 847 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 C1SP09871 688 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 CYP2A6P11509 494 aaPredicted RBP13.95□□□□□ -0.18
CLK3-204ENST00000483723 ALOX15P16050 662 aaPredicted RBP13.95□□□□□ -0.18
CLK3-204ENST00000483723 ZNF30P17039 623 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 PSMC3P17980 439 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 ITGALP20701 1170 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 GJA4P35212 333 aa13.95□□□□□ -0.18
CLK3-204ENST00000483723 SKIV2L2P42285 1042 aaKnown RBP13.95□□□□□ -0.18
CLK3-204ENST00000483723 KCNC1P48547 511 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms