RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RPL26P61254 145 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 PPIDQ08752 370 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 ZBTB17Q13105 803 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 MESDQ14696 234 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 MAP9Q49MG5 647 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 JAMLQ86YT9 394 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 CCDC13Q8IYE1 715 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 NRSN1Q8IZ57 195 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 CNTD1Q8N815 330 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 CCNYQ8ND76 341 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 TTC9Q92623 222 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 OR2M4Q96R27 311 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 WDR24Q96S15 920 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 NUDT22Q9BRQ3 303 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 RIOK2Q9BVS4 552 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 DEF6Q9H4E7 631 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 ABHD10Q9NUJ1 306 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 HAUS2Q9NVX0 235 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 DNPEPQ9ULA0 475 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 RPL26L1Q9UNX3 145 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 PCYT1BQ9Y5K3 369 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 SDK2Q58EX2 2172 aa18.69■□□□□ 0.58
CCDC88B-206ENST00000473405 LRRD1A4D1F6 860 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 RHPN2P1A8MT19 583 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 ZNF487B1APH4 448 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 NVLO15381 856 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 CPNE6O95741 557 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 ACTR1BP42025 376 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 CD86P42081 329 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 ACTR1AP61163 376 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 IFI35P80217 286 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 C19orf57Q0VDD7 668 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 C16orf72Q14CZ0 275 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 AMZ1Q400G9 498 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 PYCR3Q53H96 274 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 FAM182AQ5T1J6 154 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 PHF19Q5T6S3 580 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 ZNF574Q6ZN55 896 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 VSTM4Q8IW00 320 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 RAVER1Q8IY67 606 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 ZNF843Q8N446 348 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 EXD1Q8NHP7 514 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 SLC35G2Q8TBE7 412 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 TMEM159Q96B96 161 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 CHP1Q99653 195 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 SPTLC3Q9NUV7 552 aa18.68■□□□□ 0.58
CCDC88B-206ENST00000473405 PRAMEF33A0A0G2JMD5 474 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 C1orf232A0A0U1RR37 186 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 PPM1DO15297 605 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 INPP4BO15327 924 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 EFSO43281 561 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 AKR1B10O60218 316 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 PRAMEF10O60809 474 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 MFAP3LO75121 409 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 MTA2O94776 668 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 JCHAINP01591 159 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 PYGLP06737 847 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 PTMSP20962 102 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 CD1CP29017 333 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 ALDH4A1P30038 563 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 TGIF1Q15583 401 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 QPCTQ16769 361 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 ZFYVE27Q5T4F4 411 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 HENMT1Q5T8I9 393 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 SLC9A4Q6AI14 798 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 CCDC81Q6ZN84 652 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 MARK2Q7KZI7 788 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 PIM3Q86V86 326 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 VSIG1Q86XK7 387 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 WBP1Q96G27 269 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 ZNF830Q96NB3 372 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 CCNL2Q96S94 520 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 FOXJ2Q9P0K8 574 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 CNOT6Q9ULM6 557 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 HEY1Q9Y5J3 304 aa18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 OAS3Q9Y6K5 1087 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 UBR5O95071 2799 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-206ENST00000473405 FADS2P1A8MWK0 482 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 C9orf172C9J069 976 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 CBFA2T2O43439 604 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 DNAJC6O75061 913 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 EML2O95834 649 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 ATP1A1P05023 1023 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 CSF2RBP32927 897 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 GPR3P46089 330 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 SPINT3P49223 89 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 SRSF6Q13247 344 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 PEX6Q13608 980 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 LRP8Q14114 963 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 KIAA1614Q5VZ46 1190 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 GALNT13Q8IUC8 556 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 EID2BQ96D98 161 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 OLFM3Q96PB7 478 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 TRIB3Q96RU7 358 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 CMKLR1Q99788 373 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 CEP41Q9BYV8 373 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 NHEJ1Q9H9Q4 299 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 MYO18BQ8IUG5 2567 aa18.66■□□□□ 0.58
CCDC88B-206ENST00000473405 IGHV5-10-1A0A0J9YXX1 117 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms