RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 ETV5P41161 510 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 ACTR1BP42025 376 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 ATP1A2P50993 1020 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 CLCNKAP51800 687 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 EPHB1P54762 984 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 EPHA4P54764 986 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 ACTR1AP61163 376 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 DPYSL3Q14195 570 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 TGIF1Q15583 401 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 TXNRD3NBQ6F5E7 133 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 SLC30A9Q6PML9 568 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 TSPAN33Q86UF1 283 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 GALNT13Q8IUC8 556 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 SFTPA2Q8IWL1 248 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 ARRDC2Q8TBH0 407 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 HDAC11Q96DB2 347 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 HERPUD2Q9BSE4 406 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.46□□□□□ -0.25
CHD3-209ENST00000473376 RDH14Q9HBH5 336 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 SARS2Q9NP81 518 aaKnown RBP13.46□□□□□ -0.25
CHD3-209ENST00000473376 FOXJ2Q9P0K8 574 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 TUBD1Q9UJT1 453 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 LUC7L2Q9Y383 392 aaKnown RBP13.46□□□□□ -0.25
CHD3-209ENST00000473376 ANKRD36A6QL64 1941 aa13.46□□□□□ -0.25
CHD3-209ENST00000473376 ARHGEF17Q96PE2 2063 aaPredicted RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 A0A087X0T9 212 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 PRLP01236 227 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 FAM228BP0C875 321 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 FGF3P11487 239 aaPredicted RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 MAPK10P53779 464 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 SLC14A2Q15849 920 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 AMZ1Q400G9 498 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 ANKRD20A8PQ5CZ79 823 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 DENND2CQ68D51 928 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 NCBP2-AS2Q69YL0 99 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 ZFAND4Q86XD8 727 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 EXD3Q8N9H8 876 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 KCTD6Q8NC69 237 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 OR10G6Q8NH81 332 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 CCHCR1Q8TD31 782 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 CCDC74BQ96LY2 380 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 SRPK1Q96SB4 655 aaKnown RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 NUDT22Q9BRQ3 303 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 ARHGAP9Q9BRR9 750 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 EFHD1Q9BUP0 239 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 ADGRE3Q9BY15 652 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 XPO4Q9C0E2 1151 aaKnown RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 STN1Q9H668 368 aaKnown RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 UCK1Q9HA47 277 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 RAD18Q9NS91 495 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 RBM22Q9NW64 420 aaKnown RBP eCLIP13.45□□□□□ -0.26
CHD3-209ENST00000473376 KCNK4Q9NYG8 393 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 NFKBIL1Q9UBC1 381 aaPredicted RBP13.45□□□□□ -0.26
CHD3-209ENST00000473376 NENFQ9UMX5 172 aa13.45□□□□□ -0.26
CHD3-209ENST00000473376 SETXQ7Z333 2677 aaKnown RBP13.44□□□□□ -0.26
CHD3-209ENST00000473376 KIR2DS5A0A0G2JLQ3 304 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 A0A0G2JNG1 304 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 GOLGA6CA6NDK9 693 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 GOLGA6BA6NDN3 693 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 ANKRD66B4E2M5 251 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 KIR2DS3K7RE56 304 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 DUX1O43812 170 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 MFSD11O43934 449 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 DNAJC6O75061 913 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 PROSCO94903 275 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 H2AFZP0C0S5 128 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 GOLGA6DP0CG33 693 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 CCL4P13236 92 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 CTPS1P17812 591 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 ITGB6P18564 788 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 POLD2P49005 469 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 SPINT3P49223 89 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 UBASH3AP57075 661 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 FANCCQ00597 558 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 KCNC4Q03721 635 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 ITKQ08881 620 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 KIR2DS5Q14953 304 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 CRTC2Q53ET0 693 aaPredicted RBP13.44□□□□□ -0.26
CHD3-209ENST00000473376 DCAF12Q5T6F0 453 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 HENMT1Q5T8I9 393 aaKnown RBP13.44□□□□□ -0.26
CHD3-209ENST00000473376 PDPK2PQ6A1A2 396 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 IYDQ6PHW0 289 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 H2AFVQ71UI9 128 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 ZNF564Q8TBZ8 553 aaPredicted RBP13.44□□□□□ -0.26
CHD3-209ENST00000473376 SCAMP4Q969E2 229 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 NKD1Q969G9 470 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 CATSPER2Q96P56 530 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 SLC38A3Q99624 504 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 BRD8Q9H0E9 1235 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 CARD9Q9H257 536 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 CLMPQ9H6B4 373 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 PCDH9Q9HC56 1237 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 FBXO8Q9NRD0 319 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 GEMIN8Q9NWZ8 242 aaKnown RBP13.44□□□□□ -0.26
CHD3-209ENST00000473376 GOLGA6AQ9NYA3 693 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 PKD2L2Q9NZM6 624 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 PIEZO2Q9H5I5 2752 aa13.44□□□□□ -0.26
CHD3-209ENST00000473376 WISP1O95388 367 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms