RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NRSN1Q8IZ57 195 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 RCBTB1Q8NDN9 531 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 LPCAT1Q8NF37 534 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 CTNNBL1Q8WYA6 563 aaPredicted RBP19.65■□□□□ 0.74
COL9A3-210ENST00000472880 FATE1Q969F0 183 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 CCDC74BQ96LY2 380 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 TSGA13Q96PP4 275 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 UVRAGQ9P2Y5 699 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 PLEKHM1Q9Y4G2 1056 aa19.65■□□□□ 0.74
COL9A3-210ENST00000472880 HELZ2Q9BYK8 2649 aaKnown RBP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 CFAP46Q8IYW2 2715 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 IGHV5-10-1A0A0J9YXX1 117 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 J3QKU1 62 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 INPP4BO15327 924 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 ASMTLO95671 621 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 HLA-DQB2P05538 268 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 KRT7P08729 469 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 CD1CP29017 333 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 RPL26P61254 145 aaKnown RBP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 TRA2AQ13595 282 aaKnown RBP eCLIP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 LRP8Q14114 963 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 SKOR2Q2VWA4 1001 aaPredicted RBP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 PYCR3Q53H96 274 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 VASH2Q86V25 355 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 NLRP8Q86W28 1048 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 EXD1Q8NHP7 514 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 ZNF830Q96NB3 372 aaPredicted RBP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 AGAP2Q99490 1192 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 RIOK2Q9BVS4 552 aaKnown RBP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 B3GNT4Q9C0J1 378 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 PCDH9Q9HC56 1237 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 KCNK4Q9NYG8 393 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 IFNKQ9P0W0 207 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 LCMT1Q9UIC8 334 aa19.64■□□□□ 0.73
COL9A3-210ENST00000472880 RPL26L1Q9UNX3 145 aaKnown RBP19.64■□□□□ 0.73
COL9A3-210ENST00000472880 ZNF462Q96JM2 2506 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 IGHV1OR21-1A0A087WYE8 117 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 C1orf232A0A0U1RR37 186 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 B8ZZF3 427 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 PPM1DO15297 605 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 H2AFZP0C0S5 128 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 CASP14P31944 242 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 PPM1FP49593 454 aaPredicted RBP19.63■□□□□ 0.73
COL9A3-210ENST00000472880 LIMK2P53671 638 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 TAS2R40P59535 323 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 GBE1Q04446 702 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 NKAIN2Q5VXU1 208 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 ZNF574Q6ZN55 896 aaPredicted RBP19.63■□□□□ 0.73
COL9A3-210ENST00000472880 H2AFVQ71UI9 128 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 RAVER1Q8IY67 606 aaKnown RBP19.63■□□□□ 0.73
COL9A3-210ENST00000472880 CCDC13Q8IYE1 715 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 ZSCAN1Q8NBB4 408 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 CCNYQ8ND76 341 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 CCDC112Q8NEF3 446 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 OR4D9Q8NGE8 314 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 ARRDC2Q8TBH0 407 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 FAF2Q96CS3 445 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 HDAC11Q96DB2 347 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 COX14Q96I36 57 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 DPYSL5Q9BPU6 564 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 NENFQ9UMX5 172 aa19.63■□□□□ 0.73
COL9A3-210ENST00000472880 CLDN7O95471 211 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 TPM3P06753 285 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 CCL4P13236 92 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 CSF2RBP32927 897 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 NIPAL4Q0D2K0 466 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 IHHQ14623 411 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 DTX1Q86Y01 620 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 AGBL5Q8NDL9 886 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 SLC37A2Q8TED4 501 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 LRRN4Q8WUT4 740 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 LYSMD1Q96S90 227 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 ARHGAP9Q9BRR9 750 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 PKD2L2Q9NZM6 624 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 VPS18Q9P253 973 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 PCDHGA4Q9Y5G9 962 aa19.62■□□□□ 0.73
COL9A3-210ENST00000472880 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.62■□□□□ 0.73
COL9A3-210ENST00000472880 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.61■□□□□ 0.73
COL9A3-210ENST00000472880 STMND1H3BQB6 276 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 PRLP01236 227 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 ITGB2P05107 769 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 THRAP10827 490 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 CSTF2P33240 577 aaKnown RBP eCLIP19.61■□□□□ 0.73
COL9A3-210ENST00000472880 MAN1A1P33908 653 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 FASLGP48023 281 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 GPLD1P80108 840 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 PQLC3Q8N755 202 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 CCHCR1Q8TD31 782 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 AHCYL2Q96HN2 611 aaKnown RBP19.61■□□□□ 0.73
COL9A3-210ENST00000472880 TAAR9Q96RI9 348 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 SLC38A3Q99624 504 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 PACSIN1Q9BY11 444 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 DEF6Q9H4E7 631 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 STN1Q9H668 368 aaKnown RBP19.61■□□□□ 0.73
COL9A3-210ENST00000472880 DTLQ9NZJ0 730 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 ZNHIT2Q9UHR6 403 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 COL6A6A6NMZ7 2263 aa19.61■□□□□ 0.73
COL9A3-210ENST00000472880 AHCTF1Q8WYP5 2266 aa19.6■□□□□ 0.73
COL9A3-210ENST00000472880 DUX1O43812 170 aa19.6■□□□□ 0.73
COL9A3-210ENST00000472880 ATP1A1P05023 1023 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms