RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ZNF70Q9UC06 446 aaPredicted RBP13.28□□□□□ -0.28
COL6A3-209ENST00000472056 FABP3P05413 133 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 LARS2Q15031 903 aaKnown RBP13.27□□□□□ -0.28
COL6A3-209ENST00000472056 ATCAYQ86WG3 371 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 RCN3Q96D15 328 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 KLQ9UEF7 1012 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 ZMYM5Q9UJ78 669 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 PRAMEF33A0A0G2JMD5 474 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 PRAMEF10O60809 474 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 FGFR2P21802 821 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 CCNHP51946 323 aaPredicted RBP13.27□□□□□ -0.28
COL6A3-209ENST00000472056 POLR2JP52435 117 aaKnown RBP13.27□□□□□ -0.28
COL6A3-209ENST00000472056 PHC1P78364 1004 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 SGCGQ13326 291 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF829Q3KNS6 432 aaPredicted RBP13.27□□□□□ -0.28
COL6A3-209ENST00000472056 SLC25A25Q6KCM7 469 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 TIGD4Q8IY51 512 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 SLC34A3Q8N130 599 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 RNF148Q8N7C7 305 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 C1orf21Q9H246 121 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 ALG5Q9Y673 324 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 CDK5RAP2Q96SN8 1893 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 C9P02748 559 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 ZNF45Q02386 682 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 RASGEF1BQ0VAM2 473 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 GRB14Q14449 540 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 C11orf65Q8NCR3 313 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 ADAM32Q8TC27 787 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 CEMIPQ8WUJ3 1361 aa13.27□□□□□ -0.28
COL6A3-209ENST00000472056 CYP3A7-CYP3A51PA0A087WV96 503 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 CETPP11597 493 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 CYP3A7P24462 503 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 LAMTOR4Q0VGL1 99 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 ADAM15Q13444 863 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 ADGRE1Q14246 886 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 ZIK1Q3SY52 487 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-209ENST00000472056 BRINP3Q76B58 766 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 MAGED1Q9Y5V3 778 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-209ENST00000472056 CBX4O00257 560 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 AGBL3Q8NEM8 1001 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 NR4A3Q92570 626 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 SYNDIG1Q9H7V2 258 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 PCDH12Q9NPG4 1184 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 SNX15Q9NRS6 342 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 MARK1Q9P0L2 795 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 MTRRQ9UBK8 725 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 SEC14L3Q9UDX4 400 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF510Q9Y2H8 683 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 CSPG5O95196 566 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 UROSP10746 265 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 RFX3P48380 749 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 LAPTM5Q13571 262 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 NDUFA9Q16795 377 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 RERGQ96A58 199 aaPredicted RBP13.27□□□□□ -0.29
COL6A3-209ENST00000472056 OGDHLQ9ULD0 1010 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 ACKR2O00590 384 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 TRUB2O95900 331 aaKnown RBP13.27□□□□□ -0.29
COL6A3-209ENST00000472056 PRR5P85299 388 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 METTL7BQ6UX53 244 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 CAMK1GQ96NX5 476 aa13.27□□□□□ -0.29
COL6A3-209ENST00000472056 EIF2B3Q9NR50 452 aaKnown RBP13.27□□□□□ -0.29
COL6A3-209ENST00000472056 KIR3DL1P43629 444 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CERS6Q6ZMG9 384 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 PCDH10Q9P2E7 1040 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 NR2E1Q9Y466 385 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 LTFP02788 710 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CKBP12277 381 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 RPL4P36578 427 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 PCSK9Q8NBP7 692 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 KLHL5Q96PQ7 755 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 SETD4Q9NVD3 440 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 NDUFS2O75306 463 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF432O94892 652 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 NUDT14O95848 222 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 URODP06132 367 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 RORAP35398 523 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 NTRK3Q16288 839 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 FOXR1Q6PIV2 292 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CHSY3Q70JA7 882 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 IQCF2Q8IXL9 164 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 SAMD14Q8IZD0 417 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF639Q9UID6 485 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 AGLP35573 1532 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 PAPSS1O43252 624 aaPredicted RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 NUAK1O60285 661 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 GNAZP19086 355 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 TFEBP19484 476 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CYP4F2P78329 520 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CYP4F3Q08477 520 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 PCDH20Q8N6Y1 951 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 NFKBIZQ9BYH8 718 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 LAMA4Q16363 1823 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 AQP12BA6NM10 295 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 TTLL13PA6NNM8 815 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 CHURC1-FNTBB4DL54 471 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 XKRYO14609 159 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 FADS2O95864 444 aaKnown RBP13.26□□□□□ -0.29
COL6A3-209ENST00000472056 EFEMP1Q12805 493 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 ADGRG6Q86SQ4 1221 aa13.26□□□□□ -0.29
COL6A3-209ENST00000472056 AQP12AQ8IXF9 295 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms