RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SUMO3P55854 103 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 BASP1P80723 227 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PSG6Q00889 435 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PRKCEQ02156 737 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 GPS1Q13098 491 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PTK6Q13882 451 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 AWAT1Q58HT5 328 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 HHATQ5VTY9 493 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PDPK2PQ6A1A2 396 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 INO80CQ6PI98 192 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 USP49Q70CQ1 688 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 COMTD1Q86VU5 262 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 ERO1BQ86YB8 467 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CCDC117Q8IWD4 279 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 BBS5Q8N3I7 341 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 MPP5Q8N3R9 675 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 SFRP1Q8N474 314 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 WDTC1Q8N5D0 677 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF321PQ8N8H1 164 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 SETD6Q8TBK2 473 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 METTL6Q8TCB7 284 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 CSGALNACT1Q8TDX6 532 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 KCNE4Q8WWG9 221 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 SYN2Q92777 582 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 STAMQ92783 540 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TMIGD2Q96BF3 282 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PIWIL1Q96J94 861 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 MRGPRX1Q96LB2 322 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 RUFY1Q96T51 708 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 MESP1Q9BRJ9 268 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM79Q9BSE2 394 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 C17orf80Q9BSJ5 609 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 PUS3Q9BZE2 481 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 KLHL4Q9C0H6 718 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 LSG1Q9H089 658 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 EBF3Q9H4W6 596 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TAF1DQ9H5J8 278 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TTC12Q9H892 705 aaPredicted RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM184CQ9NVA4 438 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 STK32BQ9NY57 414 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 MTMR4Q9NYA4 1195 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TAS2R10Q9NYW0 307 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 TMOD2Q9NZR1 351 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 VPS18Q9P253 973 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 AMACRQ9UHK6 382 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 IPO11Q9UI26 975 aaKnown RBP4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 MAD2L2Q9UI95 211 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 HSF4Q9ULV5 492 aa4.9□□□□□ -1.63
CCDC88A-210ENST00000468534 SYCE3A1L190 88 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 OR6C65A6NJZ3 312 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CLCA1A8K7I4 914 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 FAM86B1E9PN63 330 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 NVLO15381 856 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 TACC1O75410 805 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ANXA2P07355 339 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 RPSAP08865 295 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 UBL4AP11441 157 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 NPR1P16066 1061 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CPT2P23786 658 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 PTPN3P26045 913 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CTNNA2P26232 953 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 CHMLP26374 656 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 RPA1P27694 616 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 TTKP33981 857 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 PSMC2P35998 433 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 PRRX1P54821 245 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC8A3P57103 927 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 MRPS15P82914 257 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 GHRHRQ02643 423 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SCN1BQ07699 218 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 IL24Q13007 206 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 DCTN2Q13561 401 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 TUBB2AQ13885 445 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 RBMS2Q15434 407 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 KLHL22Q53GT1 634 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 PLA1AQ53H76 456 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SMUG1Q53HV7 270 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ARHGAP15Q53QZ3 475 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 C9orf152Q5JTZ5 239 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 FAM69AQ5T7M9 428 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 RRAGBQ5VZM2 374 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 NEK5Q6P3R8 708 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 NOTUMQ6P988 496 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF813Q6ZN06 617 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ARMCX2Q7L311 632 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 BCDIN3DQ7Z5W3 292 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 DSG4Q86SJ6 1040 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 GATAD2AQ86YP4 633 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 LINC00346Q8IVM7 164 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 EFCAB13Q8IY85 973 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 TTC5Q8N0Z6 440 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 ZCCHC7Q8N3Z6 543 aaKnown RBP4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SIRT6Q8N6T7 355 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 GLIS1Q8NBF1 620 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 OR6Y1Q8NGX8 325 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SCAMP5Q8TAC9 235 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 URGCPQ8TCY9 931 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 BPIFB1Q8TDL5 484 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 SCFD2Q8WU76 684 aa4.89□□□□□ -1.63
CCDC88A-210ENST00000468534 INPP5DQ92835 1189 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms