RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CLCQ05315 142 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 ELAVL2Q12926 359 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TAF1AQ15573 450 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 PTPRNQ16849 979 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 HECTD3Q5T447 861 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 PSAPL1Q6NUJ1 521 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 LINGO4Q6UY18 593 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CYP2R1Q6VVX0 501 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RETREG3Q86VR2 466 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TICAM1Q8IUC6 712 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 NPAS4Q8IUM7 802 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 DDIASQ8IXT1 998 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 PIANPQ8IYJ0 282 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TMEM102Q8N9M5 508 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 STAG3L4Q8TBR4 150 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 C2orf15Q8WU43 125 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 KIAA1191Q96A73 305 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SLC45A3Q96JT2 553 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TRAPPC9Q96Q05 1148 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TDRD1Q9BXT4 1180 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RNF38Q9H0F5 515 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CCDC68Q9H2F9 335 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 MRGBPQ9NV56 204 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 TAS2R13Q9NYV9 303 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 UBAP1Q9NZ09 502 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 EPS15L1Q9UBC2 864 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 SUCOQ9UBS9 1254 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CD300AQ9UGN4 299 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 CROTQ9UKG9 612 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 AGO1Q9UL18 857 aaKnown RBP8.91□□□□□ -0.98
SYNE1-217ENST00000466159 RNF112Q9ULX5 631 aa8.91□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 A0A0J9YYE9 177 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 C2orf81A6NN90 581 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 KERAO60938 352 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 CLDN11O75508 207 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ECI2O75521 394 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 SEC24AO95486 1093 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 F11P03951 625 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 PIM1P11309 404 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 GRIA2P42262 883 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 CHN2P52757 468 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 STX1BP61266 288 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 MTA1Q13330 715 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF177Q13360 481 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 GK3PQ14409 553 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 GRM2Q14416 872 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 THEMIS2Q5TEJ8 643 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 KANK2Q63ZY3 851 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 AFTPHQ6ULP2 937 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 PHYKPLQ8IUZ5 450 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ST13P4Q8IZP2 240 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 CRIPAKQ8N1N5 446 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 FBXO39Q8N4B4 442 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 EFHBQ8N7U6 833 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ADCY4Q8NFM4 1077 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 BIRC8Q96P09 236 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 DERL2Q9GZP9 239 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 SEMA6AQ9H2E6 1030 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 IL1RL2Q9HB29 575 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 SYTL2Q9HCH5 934 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 TMEM181Q9P2C4 612 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 FKBPLQ9UIM3 349 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 TIMM22Q9Y584 194 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 RAI2Q9Y5P3 530 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 SCN5AQ14524 2016 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 C15orf38-AP3S2A0A0A6YYH1 394 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ILVBLA1L0T0 632 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 LCHNA4D1U4 455 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 NPEPPSL1A6NEC2 478 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ANKRD66B4E2M5 251 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 NR5A2O00482 541 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 GPR39O43194 453 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 DENRO43583 198 aaKnown RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 SNAP91O60641 907 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 NIPSNAP2O75323 286 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 CSPG5O95196 566 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 INHAP05111 366 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 HMGA1P17096 107 aaKnown RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 PRDX3P30048 256 aaKnown RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ACADVLP49748 655 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 AGTR2P50052 363 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ATP4BP51164 291 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 SLC7A2P52569 658 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 YBX1P67809 324 aaKnown RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 RAD51Q06609 339 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 VPS26BQ4G0F5 336 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 C6orf10Q5SRN2 563 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 RNF219Q5W0B1 726 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 NAIF1Q69YI7 327 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 C8orf82Q6P1X6 216 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ARPINQ7Z6K5 226 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 TMEM126BQ8IUX1 230 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 FUBP1Q96AE4 644 aaKnown RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ESAMQ96AP7 390 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 TUBGCP3Q96CW5 907 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 ASB2Q96Q27 587 aa8.9□□□□□ -0.98
SYNE1-217ENST00000466159 CDK5RAP1Q96SZ6 601 aaKnown RBP8.9□□□□□ -0.98
SYNE1-217ENST00000466159 MUC3BQ9H195 1237 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms