RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 IMP4Q96G21 291 aaKnown RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 SIGLEC10Q96LC7 697 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 TTC25Q96NG3 672 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 XPO6Q96QU8 1125 aaKnown RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 MYADMQ96S97 322 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 ROPN1BQ9BZX4 212 aaPredicted RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 TRIM31Q9BZY9 425 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 PABPC3Q9H361 631 aaKnown RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 C10orf88Q9H8K7 445 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 ECT2Q9H8V3 914 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 PPCSQ9HAB8 311 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 ROPN1Q9HAT0 212 aaPredicted RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 XAB2Q9HCS7 855 aaKnown RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 CASS4Q9NQ75 786 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 DUS2Q9NX74 493 aaKnown RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 CLDND1Q9NY35 253 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 KLHL8Q9P2G9 620 aaPredicted RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 UBA2Q9UBT2 640 aaPredicted RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 FETUBQ9UGM5 382 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 FAM153AQ9UHL3 310 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 CD207Q9UJ71 328 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 FBXL7Q9UJT9 491 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 INTS6Q9UL03 887 aaKnown RBP5.54□□□□□ -1.52
VPS41-211ENST00000466017 HS3ST2Q9Y278 367 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 SIT1Q9Y3P8 196 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 C2orf16Q68DN1 1984 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 DOCK8Q8NF50 2099 aa5.54□□□□□ -1.52
VPS41-211ENST00000466017 MYO18AQ92614 2054 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 KRTAP4-8A0A0G2JLE6 195 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 TCRBV7S3A2A0A539 114 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 SDR42E2A6NKP2 422 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 KCNK1O00180 336 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 MBTPS2O43462 519 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 TTC4O95801 387 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 APRTP07741 180 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PABPC1P11940 636 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 ALADP13716 330 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 TYRP14679 529 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 GLULP15104 373 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PSMC3P17980 439 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PSMA3P25788 255 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PSMB4P28070 264 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 HLA-FP30511 346 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 ADRA1AP35348 466 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 CSKP41240 450 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 MAGEA4P43358 317 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 SEPHS1P49903 392 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PMS2P54278 862 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 EIF3BP55884 814 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 LINC00310P59036 64 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 BASP1P80723 227 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 ARF5P84085 180 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 SLC10A7Q0GE19 358 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 LMAN2Q12907 356 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 MSLNQ13421 630 aaPredicted RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 SMAD4Q13485 552 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 CDH18Q13634 790 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 LAMB3Q13751 1172 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 RUNX3Q13761 415 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 GRM3Q14832 879 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 EIF4HQ15056 248 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 VMACQ2NL98 169 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 DNAJC21Q5F1R6 531 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 TANGO2Q6ICL3 276 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 KDELC1Q6UW63 502 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 ARHGAP36Q6ZRI8 547 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 ZNF534Q76KX8 674 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PRUNE1Q86TP1 453 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PRPF39Q86UA1 669 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 CAND1Q86VP6 1230 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 LRRC56Q8IYG6 542 aaPredicted RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 AHI1Q8N157 1196 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 CARNMT1Q8N4J0 409 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 BHLHE22Q8NFJ8 381 aaPredicted RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 HCAR2Q8TDS4 363 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PEX13Q92968 403 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 RSPRY1Q96DX4 576 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 SERPINB12Q96P63 405 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 NUDCD1Q96RS6 583 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 RANBP9Q96S59 729 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 SRPK1Q96SB4 655 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 RBM15Q96T37 977 aaKnown RBP eCLIP5.53□□□□□ -1.52
VPS41-211ENST00000466017 GORASP1Q9BQQ3 440 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 BBS2Q9BXC9 721 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 CPEB1Q9BZB8 566 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 POLR1EQ9GZS1 481 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 IRF2BPLQ9H1B7 796 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 POMKQ9H5K3 350 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 LRRC40Q9H9A6 602 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 MRM3Q9HC36 420 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 RSPH14Q9UHP6 348 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 RIMKLBQ9ULI2 386 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PPIL1Q9Y3C6 166 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 NFS1Q9Y697 457 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 TEX264Q9Y6I9 313 aa5.53□□□□□ -1.52
VPS41-211ENST00000466017 PRRC2BQ5JSZ5 2229 aaKnown RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 ARID1BQ8NFD5 2236 aaPredicted RBP5.53□□□□□ -1.52
VPS41-211ENST00000466017 PDE4DIPQ5VU43 2346 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms