RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TCAIMQ8N3R3 496 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 IRGQQ8WZA9 623 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF570Q96NI8 536 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 TUBGCP5Q96RT8 1024 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 AGAP2Q99490 1192 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 OSGEPL1Q9H4B0 414 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 CHRAC1Q9NRG0 131 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF221Q9UK13 617 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ZW10O43264 779 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 PCDH8O95206 1070 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ADCYAP1R1P41586 468 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 PPM1LQ5SGD2 360 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 NUSAP1Q9BXS6 441 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 AASDHPPTQ9NRN7 309 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 PCDHB1Q9Y5F3 818 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ELOVL7A1L3X0 281 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 AQP12BA6NM10 295 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 NR2F6P10588 404 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 GNPDA1P46926 289 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 SGCGQ13326 291 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 MFSD4BQ5TF39 518 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 AQP12AQ8IXF9 295 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 COQ10BQ9H8M1 238 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ARHGEF4Q9NR80 690 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 KLHL18O94889 574 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 HPGDP15428 266 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 CYP20A1Q6UW02 462 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ARMC8Q8IUR7 673 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 ZC3H7AQ8IWR0 971 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 CRISPLD1Q9H336 500 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 U3KQV3 271 aa18.95■□□□□ 0.62
CCDC88B-204ENST00000463837 FAM149AA5PLN7 773 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 ANKDD1BA6NHY2 528 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 PRMT5O14744 637 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 ABL2P42684 1182 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 GDF10P55107 478 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 NDUFAF6Q330K2 333 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 VPS26BQ4G0F5 336 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 P2RY8Q86VZ1 359 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 GATAD2AQ86YP4 633 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 ZNF567Q8N184 647 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 OR52L1Q8NGH7 329 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 FCRL2Q96LA5 508 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 NODALQ96S42 347 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 NKX1-2Q9UD57 310 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 COQ6Q9Y2Z9 468 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 TLL2Q9Y6L7 1015 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 KNDC1Q76NI1 1749 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 CCDC162PA2VCL2 907 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 FADS2O95864 444 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 UROSP10746 265 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 TINF2Q9BSI4 451 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 NFKBIZQ9BYH8 718 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 OGDHLQ9ULD0 1010 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 MRPS7Q9Y2R9 242 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 PIRTP0C851 137 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 ARF4P18085 180 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 WEE1P30291 646 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 FAR1Q8WVX9 515 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC9A8Q9Y2E8 581 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 HES2Q9Y543 173 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 CCDC189A1A4V9 331 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 CCNKO75909 580 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 TMEM63AO94886 807 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 ANGPTL1O95841 491 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 FTH1P02794 183 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 AOC1P19801 751 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 SCNN1GP51170 649 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 KCTD8Q6ZWB6 473 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 NUDT4Q9NZJ9 180 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 PDE10AQ9Y233 779 aa18.94■□□□□ 0.62
CCDC88B-204ENST00000463837 SLC15A5A6NIM6 579 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 TFECO14948 347 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 FYNP06241 537 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 MED22Q15528 200 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 PTCHD4Q6ZW05 846 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 C16orf59Q7L2K0 433 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 ELMO1Q92556 727 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 LYVE1Q9Y5Y7 322 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 CSH1P0DML2 217 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 CSH2P0DML3 217 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 CCR3P51677 355 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 MAXP61244 160 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 CAMKK1Q8N5S9 505 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 ASB9Q96DX5 294 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 B3GNT5Q9BYG0 378 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 ATP13A3Q9H7F0 1226 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 PEX16Q9Y5Y5 336 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 GLUD2P49448 558 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 SNRPD1P62314 119 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 VGLL4Q14135 290 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 RAB43Q86YS6 212 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 FAIM2Q9BWQ8 316 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 PAGE1O75459 146 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 MC4RP32245 332 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 HSPA14Q0VDF9 509 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 BPIFA1Q9NP55 256 aa18.93■□□□□ 0.62
CCDC88B-204ENST00000463837 INTS10Q9NVR2 710 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms