RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CSF2P04141 144 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 PYGLP06737 847 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 TPH1P17752 444 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 GRIA1P42261 906 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 ID4P47928 161 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 TERF1P54274 439 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 PPARDQ03181 441 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 GPS1Q13098 491 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 MSLNQ13421 630 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 SEPT6Q14141 434 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 TCEA2Q15560 299 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 TAF1AQ15573 450 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 HS1BP3Q53T59 392 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 C4orf22Q6V702 233 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 PPP1R21Q6ZMI0 780 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 PIP4P1Q86T03 277 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 LINC00523Q86TU6 105 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 HID1Q8IV36 788 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 ZNF548Q8NEK5 533 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 OR56A4Q8NGH8 313 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 SETD7Q8WTS6 366 aaKnown RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 PTCD2Q8WV60 388 aaKnown RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 TSACCQ96A04 125 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 LRRC61Q9BV99 259 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 SPATA16Q9BXB7 569 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 FRMD8Q9BZ67 464 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 SUDS3Q9H7L9 328 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 MRPL40Q9NQ50 206 aaKnown RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 EIF2B3Q9NR50 452 aaKnown RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 RAD18Q9NS91 495 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 IL17CQ9P0M4 197 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 FEZ2Q9UHY8 353 aaPredicted RBP12.41□□□□□ -0.42
SKA1-203ENST00000417656 MOSPD1Q9UJG1 213 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 KCTD3Q9Y597 815 aa12.41□□□□□ -0.42
SKA1-203ENST00000417656 COL5A1P20908 1838 aaPredicted RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 STX7O15400 261 aaKnown RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 FFAR2O15552 330 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 GPR39O43194 453 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 RASGRP1O95267 797 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 ECEL1O95672 775 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 GAS8O95995 478 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 CELA2BP08218 269 aaPredicted RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 HOXC4P09017 264 aaPredicted RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 KELP23276 732 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 DGKAP23743 735 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 SPAM1P38567 509 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 GRK6P43250 576 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 NOVA1P51513 510 aaKnown RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 ZNF140P52738 457 aaPredicted RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 SRP54P61011 504 aaKnown RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 HNRNPKP61978 463 aaKnown RBP eCLIP12.4□□□□□ -0.42
SKA1-203ENST00000417656 CDH17Q12864 832 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 PUM1Q14671 1186 aaKnown RBP eCLIP12.4□□□□□ -0.42
SKA1-203ENST00000417656 POU6F1Q14863 301 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 INAVAQ3KP66 663 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 FAM151BQ6UXP7 276 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 RD3Q7Z3Z2 195 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 NLRP8Q86W28 1048 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 KLHL7Q8IXQ5 586 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 TRAM1L1Q8N609 369 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 DNAAF3Q8N9W5 541 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 OR13C4Q8NGS5 318 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 GRK7Q8WTQ7 553 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 HIC2Q96JB3 615 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 PLEKHG4BQ96PX9 1271 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 ZSCAN5AQ9BUG6 496 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 CDH19Q9H159 772 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 CASS4Q9NQ75 786 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 FKBPLQ9UIM3 349 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 PCOLCE2Q9UKZ9 415 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 NEU2Q9Y3R4 380 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 PKP3Q9Y446 797 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 OAS3Q9Y6K5 1087 aaKnown RBP12.4□□□□□ -0.42
SKA1-203ENST00000417656 PLXNB3Q9ULL4 1909 aa12.4□□□□□ -0.42
SKA1-203ENST00000417656 CABIN1Q9Y6J0 2220 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.39□□□□□ -0.43
SKA1-203ENST00000417656 TCRBV7S3A2A0A539 114 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 PRSS38A1L453 326 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 CCDC78A2IDD5 438 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 C2orf81A6NN90 581 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 CCL22O00626 93 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 GAPDHSO14556 408 aaPredicted RBP12.39□□□□□ -0.43
SKA1-203ENST00000417656 GIPC1O14908 333 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 AQP9O43315 295 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 LDB2O43679 373 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 CRTAMO95727 393 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 CEACAM5P06731 702 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 CSRP1P21291 193 aaKnown RBP12.39□□□□□ -0.43
SKA1-203ENST00000417656 LPOP22079 712 aaPredicted RBP12.39□□□□□ -0.43
SKA1-203ENST00000417656 PAFAH1B1P43034 410 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 POLD2P49005 469 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 HK3P52790 923 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 TMPRSS15P98073 1019 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 C1orf61Q13536 156 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 SUZ12Q15022 739 aaKnown RBP12.39□□□□□ -0.43
SKA1-203ENST00000417656 PPP1R7Q15435 360 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 CCDC38Q502W7 563 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 PRRT3Q5FWE3 981 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 PSAPL1Q6NUJ1 521 aa12.39□□□□□ -0.43
SKA1-203ENST00000417656 DBX2Q6ZNG2 339 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms