RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	LAMA1	P25391	3075 aa		13.1	□□□□□ -0.31
SF1-206	ENST00000413725	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	13.09	□□□□□ -0.31
SF1-206	ENST00000413725	GLYATL1P3	A0A0U1RQE8	302 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	CCDC78	A2IDD5	438 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725		K7ESM1	405 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	TLR4	O00206	839 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	CACNB4	O00305	520 aa	Predicted RBP	13.09	□□□□□ -0.31
SF1-206	ENST00000413725	AVIL	O75366	819 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	WNT1	P04628	370 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	SYP	P08247	313 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	KEL	P23276	732 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	HTR1B	P28222	390 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	TRIM23	P36406	574 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	MAGEA3	P43357	314 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	ARL4C	P56559	192 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	PFN3	P60673	137 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	CRADD	P78560	199 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	TMPRSS15	P98073	1019 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	GUCY2D	Q02846	1103 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	ITGA9	Q13797	1035 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	PTPRCAP	Q14761	206 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	CCDC6	Q16204	474 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	HIF1A	Q16665	826 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	TSTD2	Q5T7W7	516 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	LAYN	Q6UX15	382 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	FAM151B	Q6UXP7	276 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	ADAMTSL4	Q6UY14	1074 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	HEATR4	Q86WZ0	1026 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	OR13H1	Q8NG92	308 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	OR13C4	Q8NGS5	318 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	DTX3L	Q8TDB6	740 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	PHOX2B	Q99453	314 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	APOO	Q9BUR5	198 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	ZDHHC5	Q9C0B5	715 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	CAPN10	Q9HC96	672 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	IL26	Q9NPH9	171 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	FAM114A2	Q9NRY5	505 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	NLE1	Q9NVX2	485 aa	Predicted RBP	13.09	□□□□□ -0.31
SF1-206	ENST00000413725	FKBPL	Q9UIM3	349 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	SOX13	Q9UN79	622 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	ANKRD6	Q9Y2G4	727 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.09	□□□□□ -0.31
SF1-206	ENST00000413725	WDR87	Q6ZQQ6	2873 aa		13.09	□□□□□ -0.31
SF1-206	ENST00000413725		A0A1B0GVT2	93 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	MAGEB16	A2A368	324 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	PATE3	B3GLJ2	98 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	FOXD2	O60548	495 aa	Predicted RBP	13.08	□□□□□ -0.32
SF1-206	ENST00000413725	PRAMEF1	O95521	474 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	SOD1	P00441	154 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	HOXC4	P09017	264 aa	Predicted RBP	13.08	□□□□□ -0.32
SF1-206	ENST00000413725	ZNF806	P0C7X5	589 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	MYCLP1	P12525	358 aa	Predicted RBP	13.08	□□□□□ -0.32
SF1-206	ENST00000413725	KIAA1024L	P59773	190 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	PRAME	P78395	509 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	CDK3	Q00526	305 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	SPEM2	Q0P670	501 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	PDE1C	Q14123	709 aa	Predicted RBP	13.08	□□□□□ -0.32
SF1-206	ENST00000413725	NFATC4	Q14934	902 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	BBS9	Q3SYG4	887 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	IL27RA	Q6UWB1	636 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	PELI3	Q8N2H9	469 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	STAMBPL1	Q96FJ0	436 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	HIC2	Q96JB3	615 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	KIFC1	Q9BW19	673 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	TEX101	Q9BY14	249 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	FAM129A	Q9BZQ8	928 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	EPB41L5	Q9HCM4	733 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	GDF3	Q9NR23	364 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	CHRAC1	Q9NRG0	131 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	GRHL1	Q9NZI5	618 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	OR1A2	Q9Y585	309 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	MAD1L1	Q9Y6D9	718 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	SLC30A1	Q9Y6M5	507 aa		13.08	□□□□□ -0.32
SF1-206	ENST00000413725	ESYT3	A0FGR9	886 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	FADS2P1	A8MWK0	482 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725		H7C0S8	307 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	SRP72	O76094	671 aa	Known RBP	13.07	□□□□□ -0.32
SF1-206	ENST00000413725	PAM	P19021	973 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	ITGAL	P20701	1170 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	PSMA3	P25788	255 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	ATXN3	P54252	364 aa	Predicted RBP	13.07	□□□□□ -0.32
SF1-206	ENST00000413725	PLTP	P55058	493 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	NXPH1	P58417	271 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	TUBB4B	P68371	445 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	IRX4	P78413	519 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	DHX9	Q08211	1270 aa	Known RBP	13.07	□□□□□ -0.32
SF1-206	ENST00000413725	GRIK2	Q13002	908 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	CHRNA6	Q15825	494 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	CSRP2	Q16527	193 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	TEX35	Q5T0J7	233 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	FNBP1L	Q5T0N5	605 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	KDM7A	Q6ZMT4	941 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	MACC1	Q6ZN28	852 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	PHYKPL	Q8IUZ5	450 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	OXR1	Q8N573	874 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	GPR161	Q8N6U8	529 aa	Known RBP	13.07	□□□□□ -0.32
SF1-206	ENST00000413725	SEC14L1	Q92503	715 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	ART4	Q93070	314 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	GLYATL1	Q969I3	302 aa		13.07	□□□□□ -0.32
SF1-206	ENST00000413725	FUBP1	Q96AE4	644 aa	Known RBP	13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms