RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-211ENST00000413186 KRT77Q7Z794 578 aa8.51□□□□□ -1.05
SYNE1-211ENST00000413186 SYTL1Q8IYJ3 562 aa8.51□□□□□ -1.05
SYNE1-211ENST00000413186 AGR3Q8TD06 166 aa8.51□□□□□ -1.05
SYNE1-211ENST00000413186 CYB5D2Q8WUJ1 264 aa8.51□□□□□ -1.05
SYNE1-211ENST00000413186 ZNF514Q96K75 400 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-211ENST00000413186 TBATAQ96M53 351 aa8.51□□□□□ -1.05
SYNE1-211ENST00000413186 CDYLQ9Y232 598 aa8.51□□□□□ -1.05
SYNE1-211ENST00000413186 ANKRD65E5RJM6 399 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SHOX2O60902 331 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 KATNA1O75449 491 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 CDK14O94921 469 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SERPIND1P05546 499 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 MYOGP15173 224 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 MZF1P28698 734 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 EIF2S3P41091 472 aaKnown RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SUOXP51687 545 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ARF3P61204 181 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ARF1P84077 181 aaKnown RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 OCA2Q04671 838 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 CTBP1Q13363 440 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ARSIQ5FYB1 569 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 C16orf89Q6UX73 402 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PIP4K2CQ8TBX8 421 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 TUBGCP3Q96CW5 907 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 THOC1Q96FV9 657 aaKnown RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ACTR8Q9H981 624 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PARVBQ9HBI1 364 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 NOD2Q9HC29 1040 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PPP1R14DQ9NXH3 145 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 GRHL1Q9NZI5 618 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 DNMT3BQ9UBC3 853 aaKnown RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 UPK3BL1B0FP48 263 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 UPK3BL2E5RIL1 263 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PRAMEF1O95521 474 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ADH1BP00325 375 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 COL6A2P12110 1019 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 MSLNQ13421 630 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SLC1A5Q15758 541 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ANKRD54Q6NXT1 300 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 TCP10LQ8TDR4 215 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SLC44A1Q8WWI5 657 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ZNF689Q96CS4 500 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PWWP2AQ96N64 755 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 NELL2Q99435 816 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 OSBPL7Q9BZF2 842 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 MIR1-1HGQ9H1L0 117 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SAR1AQ9NR31 198 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 BATF3Q9NR55 127 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SORCS3Q9UPU3 1222 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 DRGXA6NNA5 263 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PHGDHO43175 533 aaKnown RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 BANF1O75531 89 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 TM7SF2O76062 418 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SERPINE1P05121 402 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SLC35G4P0C7Q5 338 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PTGER3P43115 390 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SCTRP47872 440 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 TGM3Q08188 693 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 EFR3AQ14156 821 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 TPRG1Q6ZUI0 275 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 MARK2Q7KZI7 788 aaKnown RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 KBTBD6Q86V97 674 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 STX12Q86Y82 276 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 HLA-CQ95604 372 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 RAB7BQ96AH8 199 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 NRBF2Q96F24 287 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 SLC39A13Q96H72 371 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 PBX4Q9BYU1 374 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ZNF334Q9HCZ1 680 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ARHGEF3Q9NR81 526 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 OBP2AQ9NY56 170 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ZNHIT2Q9UHR6 403 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 ZNF180Q9UJW8 692 aa8.5□□□□□ -1.05
SYNE1-211ENST00000413186 A0A0D9SEW6 157 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 ANKRD66B4E2M5 251 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 HHLA1C9JL84 531 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 TPP1O14773 563 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 WNT9AO14904 365 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 DEAF1O75398 565 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 CCDC166P0CW27 439 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 ENO3P13929 434 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 CALB2P22676 271 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 AKT2P31751 481 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 HABP4Q5JVS0 413 aaKnown RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 FNBP1LQ5T0N5 605 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 GPR149Q86SP6 731 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 TDRPQ86YL5 185 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 MMAAQ8IVH4 418 aaKnown RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 SLC40A1Q9NP59 571 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 SSU72Q9NP77 194 aaKnown RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 ARL15Q9NXU5 204 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 LCHNA4D1U4 455 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 NCF1BA6NI72 391 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 NCF1CA8MVU1 366 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 H3BQ06 376 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-211ENST00000413186 TULP3O75386 442 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 TMEM63AO94886 807 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 FSBPO95073 299 aa8.49□□□□□ -1.05
SYNE1-211ENST00000413186 ANP32DO95626 131 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms