RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZBTB6Q15916 424 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SNRNP35Q16560 246 aaKnown RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 TMEM196Q5HYL7 178 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 TMEM31Q5JXX7 168 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 C9orf57Q5W0N0 161 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SLC8B1Q6J4K2 584 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SLC39A4Q6P5W5 647 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 KRBA2Q6ZNG9 492 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 DTX2Q86UW9 622 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 GATAD2AQ86YP4 633 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 WDR49Q8IV35 697 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 NELFCDQ8IXH7 590 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 DCP1BQ8IZD4 617 aaKnown RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 FSTL5Q8N475 847 aaPredicted RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 LRRC52Q8N7C0 313 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 C12orf76Q8N812 135 aaPredicted RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 LEMD2Q8NC56 503 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SENP8Q96LD8 212 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 TSG101Q99816 390 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CLSTN3Q9BQT9 956 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 AIFM2Q9BRQ8 373 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 FAM167BQ9BTA0 163 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 TP63Q9H3D4 680 aaPredicted RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 POMKQ9H5K3 350 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CYP4F11Q9HBI6 524 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 GLOD4Q9HC38 313 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 RPS6KL1Q9Y6S9 549 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CLUHO75153 1309 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 FAM237AA0A1B0GTK4 181 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 GOLGA8IPA6NC78 632 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 GOLGA8JA6NMD2 632 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 KPNA7A9QM74 516 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 LOC730098B7Z3J9 87 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 PI4K2BG5E9Z4 385 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 PDXKO00764 312 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CYB561D2O14569 222 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 PROM1O43490 865 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 FAM189A1O60320 539 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 ITGA2BP08514 1039 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 DLATP10515 647 aaKnown RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 KRT13P13646 458 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 ADSSP30520 456 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CYP2J2P51589 502 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SATB1Q01826 763 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 ROR1Q01973 937 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 KCNB1Q14721 858 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 VEPH1Q14D04 833 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CYP4A22Q5TCH4 519 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 ITIH5Q86UX2 942 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 C12orf56Q8IXR9 622 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 UBALD2Q8IYN6 164 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 TMEM86AQ8N2M4 240 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CSGALNACT2Q8N6G5 542 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SPATA18Q8TC71 538 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 PROKR1Q8TCW9 393 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 C2orf15Q8WU43 125 aaKnown RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 XAGE5Q8WWM1 108 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CTHRC1Q96CG8 243 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 ZDHHC12Q96GR4 267 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 CBWD1Q9BRT8 395 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 WDR6Q9NNW5 1121 aaKnown RBP6.62□□□□□ -1.35
USP40-202ENST00000409945 AGPAT3Q9NRZ7 376 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 FBXL5Q9UKA1 691 aa6.62□□□□□ -1.35
USP40-202ENST00000409945 SPTBN5Q9NRC6 3674 aaKnown RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 PDCD11Q14690 1871 aaKnown RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 VCANP13611 3396 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 PIRO00625 290 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 CLIC2O15247 247 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 SH3BP5O60239 455 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 OAZ2O95190 189 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 FGF19O95750 216 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 P4HA1P13674 534 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 PTPN2P17706 415 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 SP100P23497 879 aaPredicted RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 LHX1P48742 406 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 TUFMP49411 452 aaKnown RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 ALDH18A1P54886 795 aaKnown RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 FAM3BP58499 235 aaPredicted RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 BFSP1Q12934 665 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 TUBA3CQ13748 450 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 ZSCAN23Q3MJ62 389 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 CAVIN1Q6NZI2 390 aaKnown RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 TUBA3EQ6PEY2 450 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 KLHL17Q6TDP4 642 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 MTSS1LQ765P7 747 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 GET4Q7L5D6 327 aaPredicted RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 SLC44A2Q8IWA5 706 aaPredicted RBP6.61□□□□□ -1.35
USP40-202ENST00000409945 SCFD1Q8WVM8 642 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 SMARCE1Q969G3 411 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 UBXN10Q96LJ8 280 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 TIGD1Q96MW7 591 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 GSDMAQ96QA5 445 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 GCNAQ96QF7 691 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 RTKNQ9BST9 563 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 VPS16Q9H269 839 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 CXCL16Q9H2A7 254 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 CASS4Q9NQ75 786 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 TBCCD1Q9NVR7 557 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 KCTD5Q9NXV2 234 aa6.61□□□□□ -1.35
USP40-202ENST00000409945 TESQ9UGI8 421 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms