RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PTPN11Q06124 597 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 UCMAQ8WVF2 138 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CCDC32Q9BV29 185 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 NFKBIZQ9BYH8 718 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 NMUR2Q9GZQ4 415 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 LMAN2LQ9H0V9 348 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 FAM205AQ6ZU69 1335 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 DNM1LO00429 736 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ACO1P21399 889 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PCBP1Q15365 356 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF720Q7Z2F6 126 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 EXOC2Q96KP1 924 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF358Q9NW07 568 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 PRKAG2Q9UGJ0 569 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 NEURL4Q96JN8 1562 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 C1orf196B1AJZ1 125 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ENTPD6O75354 484 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CYP7B1O75881 506 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CCNYL3P0C7X3 344 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CD44P16070 742 aaKnown RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 CHRNA5P30532 468 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF404Q494X3 552 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 LMBRD2Q68DH5 695 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 DNAJC14Q6Y2X3 702 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SLC4A11Q8NBS3 891 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF248Q8NDW4 579 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SELENOMQ8WWX9 145 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 FOLH1BQ9HBA9 442 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SLC35C2Q9NQQ7 365 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 FAM86C1Q9NVL1 165 aa12.86□□□□□ -0.35
COL6A3-206ENST00000409809 SLC28A2O43868 658 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CSN2P05814 226 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CLUP10909 449 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 GNAZP19086 355 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 POU5F1Q01860 360 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CLCA4Q14CN2 919 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CRY1Q16526 586 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 MED8Q96G25 268 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 PANX1Q96RD7 426 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 DCSTAMPQ9H295 470 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 USP29Q9HBJ7 922 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SEMA3GQ9NS98 782 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 PRR5-ARHGAP8B1AHC4 643 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CRTAPO75718 401 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 RPP38P78345 283 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ARHGAP8P85298 464 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 FSTL1Q12841 308 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CDKL4Q5MAI5 379 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SERPINA13PQ6UXR4 307 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 APOBEC3FQ8IUX4 373 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 C12orf50Q8NA57 414 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SLC44A1Q8WWI5 657 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CCDC3Q9BQI4 270 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 COMMD4Q9H0A8 199 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 DPP3Q9NY33 737 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 HSPB11Q9Y547 144 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 A0A0J9YYE9 177 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 LRRC14BA6NHZ5 514 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CTDNEP1O95476 244 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 NPPAP01160 153 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 MGAT1P26572 445 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 NDUFA9Q16795 377 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ASTE1Q2TB18 679 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TSPAN33Q86UF1 283 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TMEM176AQ96HP8 235 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TMEM184CQ9NVA4 438 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TCRBV9S1A1TA0A576 114 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ZSCAN5BA6NJL1 495 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SIGLEC16A6NMB1 481 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SLITRK5O94991 958 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 LIMK2P53671 638 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CREMQ03060 361 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 PDIA6Q15084 440 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF773Q6PK81 442 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ALYREFQ86V81 257 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 PDSS2Q86YH6 399 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 UBQLNLQ8IYU4 475 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SEC14L1Q92503 715 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 HYLS1Q96M11 299 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF471Q9BX82 626 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 SEMA6BQ9H3T3 888 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TMEM5Q9Y2B1 443 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CHKAP35790 457 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 AADACL4Q5VUY2 407 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 LSM14AQ8ND56 463 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 HEXDCQ8WVB3 486 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 HERC2P3Q9BVR0 1158 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 INTS7Q9NVH2 962 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TAS2R3Q9NYW6 316 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 DISC1C4P0D8 188 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 NADK2Q4G0N4 442 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ATCAYQ86WG3 371 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 HSPA12BQ96MM6 686 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 TSNAXQ99598 290 aaKnown RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 CISHQ9NSE2 258 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 PPP2R2BQ00005 443 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ZNF267Q14586 743 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-206ENST00000409809 IQCCQ4KMZ1 466 aa12.85□□□□□ -0.35
COL6A3-206ENST00000409809 ZCCHC12Q6PEW1 402 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms