RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 POLR3BQ9NW08 1133 aaPredicted RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 AGO1Q9UL18 857 aaKnown RBP13.35□□□□□ -0.27
VPS54-203ENST00000409558 AP4S1Q9Y587 144 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 RAI2Q9Y5P3 530 aa13.35□□□□□ -0.27
VPS54-203ENST00000409558 H2AFYO75367 372 aaKnown RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 ALOX15P16050 662 aaPredicted RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 TRIP4Q15650 581 aaPredicted RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 ZNF678Q5SXM1 525 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 METTL21CQ5VZV1 264 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 TXNDC8Q6A555 127 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 SMYD5Q6GMV2 418 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 DET1Q7L5Y6 550 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 MIER2Q8N344 545 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 JADE3Q92613 823 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 CNDP1Q96KN2 507 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 HGH1Q9BTY7 390 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 DICER1Q9UPY3 1922 aaKnown RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 SLC38A8A6NNN8 435 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 INSIG1O15503 277 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 OR4F21O95013 312 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 TYMPP19971 482 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 TMEM259Q4ZIN3 620 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 OTUD3Q5T2D3 398 aaPredicted RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 RETREG3Q86VR2 466 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 OR52B6Q8NGF0 335 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 PRDM16Q9HAZ2 1276 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 ZFP14Q9HCL3 533 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 LATS2Q9NRM7 1088 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 TMEM248Q9NWD8 314 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 A0A1W2PQ45 241 aaPredicted RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 A0A1W2PQY0 241 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 AZIN1O14977 448 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 TBL1XO60907 577 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 SLC10A3P09131 477 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 LEPRP48357 1165 aaKnown RBP13.34□□□□□ -0.27
VPS54-203ENST00000409558 SLC11A2P49281 568 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 STX5Q13190 355 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 FNDC5Q8NAU1 212 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 RDH11Q8TC12 318 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 TEX37Q96LM6 180 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 SLC29A1Q99808 456 aa13.34□□□□□ -0.27
VPS54-203ENST00000409558 ARHGEF37A1IGU5 675 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 UPK3BL1B0FP48 263 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 UPK3BL2E5RIL1 263 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 AXIN1O15169 862 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 COCHO43405 550 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 ECI2O75521 394 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 RHOAP61586 193 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 SMAD3P84022 425 aaKnown RBP13.33□□□□□ -0.27
VPS54-203ENST00000409558 ACAP2Q15057 778 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 ARL14EPQ8N8R7 260 aaPredicted RBP13.33□□□□□ -0.27
VPS54-203ENST00000409558 CYGBQ8WWM9 190 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 ISL2Q96A47 359 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 TTPALQ9BTX7 342 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 TRMT6Q9UJA5 497 aaKnown RBP13.33□□□□□ -0.27
VPS54-203ENST00000409558 LZTS1Q9Y250 596 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 PCDHGA7Q9Y5G6 932 aa13.33□□□□□ -0.27
VPS54-203ENST00000409558 RPP40O75818 363 aaKnown RBP13.33□□□□□ -0.28
VPS54-203ENST00000409558 CD1DP15813 335 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 ZNF37AP17032 561 aaPredicted RBP13.33□□□□□ -0.28
VPS54-203ENST00000409558 PFKPQ01813 784 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 NFYCQ13952 458 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 TCTN1Q2MV58 587 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 AAGABQ6PD74 315 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.33□□□□□ -0.282e-7■□□□□ 10
VPS54-203ENST00000409558 DDI1Q8WTU0 396 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 PPM1MQ96MI6 270 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 TMEM79Q9BSE2 394 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 TAS2R13Q9NYV9 303 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 HEMK1Q9Y5R4 338 aaPredicted RBP13.33□□□□□ -0.28
VPS54-203ENST00000409558 OAZ2O95190 189 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 NDST2P52849 883 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 CLCQ05315 142 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 CDH18Q13634 790 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 MBOAT1Q6ZNC8 495 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 TSPAN18Q96SJ8 248 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 BOCQ9BWV1 1114 aa13.33□□□□□ -0.28
VPS54-203ENST00000409558 C2orf81A6NN90 581 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 ACSL4O60488 711 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 INHAP05111 366 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 ZIK1Q3SY52 487 aaPredicted RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 OFCC1Q8IZS5 231 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 TBCDQ9BTW9 1192 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 DNMT3LQ9UJW3 386 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 VCANP13611 3396 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 ZSWIM8A7E2V4 1837 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 PDCD11Q14690 1871 aaKnown RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 SLCO1B7G3V0H7 640 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 SLC7A4O43246 635 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CLPTM1O96005 669 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CAPN3P20807 821 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 IMPDH1P20839 514 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 DGKQP52824 942 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 UFM1P61960 85 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 TBCELQ5QJ74 424 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 PTRHD1Q6GMV3 140 aaKnown RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 ZBTB49Q6ZSB9 765 aa13.32□□□□□ -0.28
VPS54-203ENST00000409558 CHST15Q7LFX5 561 aaPredicted RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 GFM2Q969S9 779 aaKnown RBP13.32□□□□□ -0.28
VPS54-203ENST00000409558 UROC1Q96N76 676 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms