RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 OR2AG2A6NM03 316 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 IQCF5A8MTL0 148 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 TEX46H3BTG2 121 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 AZIN1O14977 448 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ATP6AP2O75787 350 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CSTF2P33240 577 aaKnown RBP eCLIP7.17□□□□□ -1.26
UPF2-203ENST00000397053 RPL22P35268 128 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 PGDP52209 483 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 GMFBP60983 142 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 PPP3R1P63098 170 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 MRPS22P82650 360 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 CTBP1Q13363 440 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ZIK1Q3SY52 487 aaPredicted RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 UBXN11Q5T124 520 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 SLC8B1Q6J4K2 584 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 FUT10Q6P4F1 479 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ANKS1BQ7Z6G8 1248 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ZSCAN4Q8NAM6 433 aaPredicted RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 TMEM145Q8NBT3 493 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ZNF540Q8NDQ6 660 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 GPR88Q9GZN0 384 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 OSER1Q9NX31 292 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 MOCS1Q9NZB8 636 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ARHGAP20Q9P2F6 1191 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 C5orf60A6NFR6 353 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 H3BUI4 141 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 PAGE1O75459 146 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 REM1O75628 298 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 GATBO75879 557 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 UBOX5O94941 541 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 TNFAIP8O95379 198 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 POP4O95707 220 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 OR4Q2P0C623 313 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 DBTP11182 482 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 PDHA2P29803 388 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 GRM5P41594 1212 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 RAB10P61026 200 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 RPL19P84098 196 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 DMPKQ09013 629 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 TOP3AQ13472 1001 aaPredicted RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 HKDC1Q2TB90 917 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ADGRG6Q86SQ4 1221 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 SNX33Q8WV41 574 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 RELTQ969Z4 430 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 COQ8BQ96D53 544 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 PTCD3Q96EY7 689 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 RNF157Q96PX1 679 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 GPR20Q99678 358 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 MRPL57Q9BQC6 102 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 HEPHQ9BQS7 1158 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 NXF3Q9H4D5 531 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 LDAHQ9H6V9 325 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 DNAJC28Q9NX36 388 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 VWA7Q9Y334 891 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CPSF4LA6NMK7 179 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 PLSCR1O15162 318 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CD2P06729 351 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 JMJD7P0C870 316 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ACRP10323 421 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 GOT1P17174 413 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 SPAM1P38567 509 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CCR3P51677 355 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 PTPN5P54829 565 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CDH13P55290 713 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 FPGSQ05932 587 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 TNK2Q07912 1038 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 C2orf80Q0P641 193 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CAPSQ13938 189 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 RAB30Q15771 203 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 SLC9B1Q4ZJI4 515 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 RNF43Q68DV7 783 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 NPAS4Q8IUM7 802 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 TCAIMQ8N3R3 496 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 KBTBD8Q8NFY9 601 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 OR7A2PQ8NGA2 310 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 PIWIL2Q8TC59 973 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 FNIP1Q8TF40 1166 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 KCTD4Q8WVF5 259 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 KLK6Q92876 244 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 TESCQ96BS2 214 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 SIPA1Q96FS4 1042 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 WDR18Q9BV38 432 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 DUSP16Q9BY84 665 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ATG10Q9H0Y0 220 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CST11Q9H112 138 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 SERINC1Q9NRX5 453 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CNOT6Q9ULM6 557 aaKnown RBP7.17□□□□□ -1.26
UPF2-203ENST00000397053 SSR3Q9UNL2 185 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 ZDHHC9Q9Y397 364 aa7.17□□□□□ -1.26
UPF2-203ENST00000397053 CNTNAP1P78357 1384 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 SMIM35A0A1B0GVV1 85 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 AREL1O15033 823 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 MDM4O15151 490 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 OR1F1O43749 312 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PLIN3O60664 434 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 DUSP11O75319 330 aaKnown RBP7.16□□□□□ -1.26
UPF2-203ENST00000397053 SEMA3DO95025 777 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 PGM3O95394 542 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 CTDNEP1O95476 244 aa7.16□□□□□ -1.26
UPF2-203ENST00000397053 TCF4P15884 667 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms