RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CYP4F3Q08477 520 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNHIT3Q15649 155 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CPSF6Q16630 551 aaKnown RBP eCLIP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 LSM12Q3MHD2 195 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PTPN20Q4JDL3 420 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 XKR6Q5GH73 641 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PM20D2Q8IYS1 436 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 RBFAQ8N0V3 343 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SPATA6LQ8N4H0 392 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SOCS4Q8WXH5 440 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CPT1BQ92523 772 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PPP1R16AQ96I34 528 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CAB39LQ9H9S4 337 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 KCNE2Q9Y6J6 123 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CARNS1A5YM72 827 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 C9IYK1 514 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PSIP1O75475 530 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 IPO13O94829 963 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CHRNGP07510 517 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 RPL9P32969 192 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GRM5P41594 1212 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GJA9P57773 515 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GALNT3Q14435 633 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 MED22Q15528 200 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 THAP5Q7Z6K1 395 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 LRRC57Q8N9N7 239 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 TEX47Q8TBZ9 253 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PTCD2Q8WV60 388 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNF607Q96SK3 696 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 FNDC11Q9BVV2 318 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 DUSP16Q9BY84 665 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ADGRE2Q9UHX3 823 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 MFHAS1Q9Y4C4 1052 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 POLR3HQ9Y535 204 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 YDJCA8MPS7 323 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PSMD11O00231 422 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 AP3D1O14617 1153 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC6A2P23975 617 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RNF220Q5VTB9 566 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 TAPT1Q6NXT6 567 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PHC2Q8IXK0 858 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 CIB1Q99828 191 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 NEK6Q9HC98 313 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RIC1Q4ADV7 1423 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RB1P06400 928 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 KLRC2P26717 231 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 BTG3Q14201 252 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RD3Q7Z3Z2 195 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 ZBTB46Q86UZ6 589 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 TOP6BLQ8N6T0 577 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 ART5Q96L15 291 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 OGDHLQ9ULD0 1010 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 COQ6Q9Y2Z9 468 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 SPATA31C2B4DYI2 1134 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 WWP2O00308 870 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 XYLBO75191 536 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 NOL4O94818 638 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PGK1P00558 417 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 HIST1H2ABP04908 130 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 GDI2P50395 445 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PFKPQ01813 784 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 ECM1Q16610 540 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PDCD4Q53EL6 469 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 FNDC3BQ53EP0 1204 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 TEX44Q53QW1 395 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PPP1R26Q5T8A7 1209 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 CATSPERGQ6ZRH7 1159 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PTCHD4Q6ZW05 846 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 HIST3H2AQ7L7L0 130 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 HM13Q8TCT9 377 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 LPGAT1Q92604 370 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 HIST1H2ACQ93077 130 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 CSPG4P5Q96PW8 444 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 OSBPL7Q9BZF2 842 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 DERAQ9Y315 318 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 MOXD2PA6NHM9 499 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 MDM4O15151 490 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 KHDRBS3O75525 346 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 DHFRP00374 187 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 FGRP09769 529 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNF24P17028 368 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 GPAT3Q53EU6 434 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 EEF1DP3Q658K8 133 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 GLYATQ6IB77 296 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 CRTC3Q6UUV7 619 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 LCLAT1Q6UWP7 414 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 PNPT1Q8TCS8 783 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 NAT14Q8WUY8 206 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RBM4BQ9BQ04 359 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 RBM4Q9BWF3 364 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 BPIFA1Q9NP55 256 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNHIT2Q9UHR6 403 aa10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 AGO1Q9UL18 857 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-203ENST00000396595 LOC110117498-PIK3R3F6TDL0 507 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 PLK4O00444 970 aa10.22□□□□□ -0.77
LIMCH1-203ENST00000396595 WNT7AO00755 349 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms