RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 DUSP23Q9BVJ7 150 aa21.6■■□□□ 1.05
CLN3-207ENST00000395653 FADS2P1A8MWK0 482 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 CEACAM5P06731 702 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 BPIP17213 487 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 TCP1P17987 556 aaKnown RBP21.59■■□□□ 1.05
CLN3-207ENST00000395653 ELOCQ15369 112 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 KCTD16Q68DU8 428 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 RD3Q7Z3Z2 195 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 SDR16C5Q8N3Y7 309 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 TRAM1L1Q8N609 369 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 PDCD7Q8N8D1 485 aaKnown RBP21.59■■□□□ 1.05
CLN3-207ENST00000395653 CNDP2Q96KP4 475 aaKnown RBP21.59■■□□□ 1.05
CLN3-207ENST00000395653 MRPL40Q9NQ50 206 aaKnown RBP21.59■■□□□ 1.05
CLN3-207ENST00000395653 IL17CQ9P0M4 197 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 SLC17A4Q9Y2C5 497 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 SPTBN2O15020 2390 aa21.59■■□□□ 1.05
CLN3-207ENST00000395653 PRSS38A1L453 326 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 LMO7DNF2Z398 122 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 TRIM38O00635 465 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 TPP1O14773 563 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 FFAR2O15552 330 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 SIGLEC6O43699 453 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 PPFIA2O75334 1257 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 LDOC1O95751 146 aaPredicted RBP21.58■■□□□ 1.05
CLN3-207ENST00000395653 ADRB1P08588 477 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 CTSEP14091 401 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 ETS1P14921 441 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 MSLNQ13421 630 aaPredicted RBP21.58■■□□□ 1.05
CLN3-207ENST00000395653 N4BP2L1Q5TBK1 243 aaPredicted RBP21.58■■□□□ 1.05
CLN3-207ENST00000395653 ALS2CLQ60I27 953 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 C4orf22Q6V702 233 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 LINC00523Q86TU6 105 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 TAB3Q8N5C8 712 aaPredicted RBP21.58■■□□□ 1.05
CLN3-207ENST00000395653 GLIS1Q8NBF1 620 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 DTX3LQ8TDB6 740 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 BRSK1Q8TDC3 778 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 SPATA16Q9BXB7 569 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 CLPBQ9H078 707 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 ETNK1Q9HBU6 452 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 CYP4F12Q9HCS2 524 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 BPIFA1Q9NP55 256 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 CNOT6Q9ULM6 557 aaKnown RBP21.58■■□□□ 1.05
CLN3-207ENST00000395653 SCN8AQ9UQD0 1980 aa21.58■■□□□ 1.05
CLN3-207ENST00000395653 TDRD6O60522 2096 aaKnown RBP21.57■■□□□ 1.04
CLN3-207ENST00000395653 KCNJ1P48048 391 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 C1orf61Q13536 156 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 SEMA5AQ13591 1074 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 TAF1AQ15573 450 aaPredicted RBP21.57■■□□□ 1.04
CLN3-207ENST00000395653 PROX2Q3B8N5 592 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 GSTA5Q7RTV2 222 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 PRUNE1Q86TP1 453 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 RAB6BQ9NRW1 208 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 TOR4AQ9NXH8 423 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP21.57■■□□□ 1.04
CLN3-207ENST00000395653 MOSPD1Q9UJG1 213 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 PKP3Q9Y446 797 aa21.57■■□□□ 1.04
CLN3-207ENST00000395653 ARID1BQ8NFD5 2236 aaPredicted RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 C2orf81A6NN90 581 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 INPP4BO15327 924 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 IVLP07476 585 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 FTH1P19P0C7X4 201 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 RPL22P35268 128 aaKnown RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 SPAM1P38567 509 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 PDE1BQ01064 536 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 CYP1B1Q16678 543 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 PAPD7Q5XG87 772 aaKnown RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 ZCCHC8Q6NZY4 707 aaKnown RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 TRIM74Q86UV6 250 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 FAM181AQ8N9Y4 354 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 SCARF2Q96GP6 870 aaPredicted RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 NAPGQ99747 312 aaPredicted RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 C19orf43Q9BQ61 176 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 AP1M1Q9BXS5 423 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 CARS2Q9HA77 564 aaKnown RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 VPS18Q9P253 973 aa21.56■■□□□ 1.04
CLN3-207ENST00000395653 APOBEC2Q9Y235 224 aaKnown RBP21.56■■□□□ 1.04
CLN3-207ENST00000395653 E7EVH7 732 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 STX7O15400 261 aaKnown RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 SUN1O94901 812 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 CRTAMO95727 393 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 ANXA6P08133 673 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 CELA2BP08218 269 aaPredicted RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 ZSCAN5DPP0CG00 497 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 LPOP22079 712 aaPredicted RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 FOXK2Q01167 660 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 DEFB133Q30KQ1 61 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 DOK6Q6PKX4 331 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 LVRNQ6Q4G3 990 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 GKN2Q86XP6 184 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 MAGOHBQ96A72 148 aaKnown RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 VPS35Q96QK1 796 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 IL26Q9NPH9 171 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 TRNAU1APQ9NX07 287 aaKnown RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 SMARCAL1Q9NZC9 954 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 SUFUQ9UMX1 484 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 ARL5AQ9Y689 179 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 MED19A0JLT2 244 aaPredicted RBP21.55■■□□□ 1.04
CLN3-207ENST00000395653 ZNF185O15231 689 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 YY2O15391 372 aa21.55■■□□□ 1.04
CLN3-207ENST00000395653 BUD23O43709 281 aaKnown RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms