RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 IL22Q9GZX6 179 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 DUSP15Q9H1R2 295 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 MTG2Q9H4K7 406 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ZDHHC6Q9H6R6 413 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 PREBQ9HCU5 417 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 NT5MQ9NPB1 228 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 TXNDC16Q9P2K2 825 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 EVLQ9UI08 416 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 AAR2Q9Y312 384 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 PSAT1Q9Y617 370 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 IGHV1OR15-9A0A0B4J2B8 117 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 FAM237BA0A1B0GVD1 139 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CFAP73A6NFT4 308 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 AP3B1O00203 1094 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 TRAFD1O14545 582 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 TPP1O14773 563 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 MUSKO15146 869 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 RNASEH2AO75792 299 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 ALDOAP04075 364 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 GP5P40197 560 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 NBL1P41271 181 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 SKIV2L2P42285 1042 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 NUMBP49757 651 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ITKQ08881 620 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ELP6Q0PNE2 266 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CDH17Q12864 832 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 OVGP1Q12889 678 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CERCAMQ5T4B2 595 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ATXN7L2Q5T6C5 722 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 FBXL19Q6PCT2 694 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 LPCAT2Q7L5N7 544 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 LINC00523Q86TU6 105 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 PGBD5Q8N414 524 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 PRSS33Q8NF86 280 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 VOPP1Q96AW1 172 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 TADA1Q96BN2 335 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ERP27Q96DN0 273 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 IMP4Q96G21 291 aaKnown RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 FCRL5Q96RD9 977 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CPNE1Q99829 537 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 SEMA3CQ99985 751 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 APOL2Q9BQE5 337 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ADGRE3Q9BY15 652 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 TRIM55Q9BYV6 548 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 MYLK2Q9H1R3 596 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 NOD2Q9HC29 1040 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 POLR3BQ9NW08 1133 aaPredicted RBP10.19□□□□□ -0.78
VPS53-202ENST00000389040 UBP1Q9NZI7 540 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 IL1RAPL1Q9NZN1 696 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 SIRPGQ9P1W8 387 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 SARDHQ9UL12 918 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 CHKBQ9Y259 395 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 PPIL1Q9Y3C6 166 aa10.19□□□□□ -0.78
VPS53-202ENST00000389040 ZCWPW2A0A1B0GU75 182 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 C16orf96A6NNT2 1141 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 H0Y858 1186 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 MAP3K13O43283 966 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 TSPAN6O43657 245 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 PLRG1O43660 514 aaKnown RBP10.18□□□□□ -0.78
VPS53-202ENST00000389040 NDUFS2O75306 463 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 ANXA9O76027 345 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 TGDSO95455 350 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 HLA-DQB2P05538 268 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 HOXD12P35452 270 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 DRD3P35462 400 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 SMAD1Q15797 465 aaKnown RBP10.18□□□□□ -0.78
VPS53-202ENST00000389040 ANKRD20A4Q4UJ75 823 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 GRTP1Q5TC63 336 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 KYAT3Q6YP21 454 aaKnown RBP10.18□□□□□ -0.78
VPS53-202ENST00000389040 AADATQ8N5Z0 425 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 OR2T34Q8NGX1 318 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 ARRDC2Q8TBH0 407 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 RAB3IL1Q8TBN0 382 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 GRIN3AQ8TCU5 1115 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 GANCQ8TET4 914 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 ATOH1Q92858 354 aaPredicted RBP10.18□□□□□ -0.78
VPS53-202ENST00000389040 ZNF419Q96HQ0 510 aaPredicted RBP10.18□□□□□ -0.78
VPS53-202ENST00000389040 MECRQ9BV79 373 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 GLOD4Q9HC38 313 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 KCTD5Q9NXV2 234 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 NUP205Q92621 2012 aa10.18□□□□□ -0.78
VPS53-202ENST00000389040 PROB1E7EW31 1015 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 BIRC5O15392 142 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 HRO43593 1189 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 GLRA3O75311 464 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 TOP3BO95985 862 aaKnown RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 UGT2B4P06133 528 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 ADRB3P13945 408 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 HNRNPH1P31943 449 aaKnown RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 RGRP47804 291 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 PXNP49023 591 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 CCR5P51681 352 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 PDE1BQ01064 536 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 DMWDQ09019 674 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 CNTN1Q12860 1018 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 MPP3Q13368 585 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 PDE1CQ14123 709 aaPredicted RBP10.17□□□□□ -0.78
VPS53-202ENST00000389040 UGP2Q16851 508 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 PIP5KL1Q5T9C9 394 aa10.17□□□□□ -0.78
VPS53-202ENST00000389040 ARMC12Q5T9G4 340 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms