RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 EFHD1Q9BUP0 239 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 TUBB1Q9H4B7 451 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 MID1IP1Q9NPA3 183 aa16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 MRPL40Q9NQ50 206 aaKnown RBP16.22■□□□□ 0.19
NKX3-1-201ENST00000380871 DHRS12A0PJE2 317 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CDK14O94921 469 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 IGLV3-25P01717 112 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 RBP1P09455 135 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 LINC00032P0C843 101 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 BMP2P12643 396 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CLCN5P51795 746 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 ADRM1Q16186 407 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 PFKFB4Q16877 469 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 MANEALQ5VSG8 457 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 MARC1Q5VT66 337 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CMTR2Q8IYT2 770 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CYGBQ8WWM9 190 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 PIF1Q9H611 641 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 MRM3Q9HC36 420 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 THEGQ9P2T0 379 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 MIA3Q5JRA6 1907 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 H3BMM5 538 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 SERPINH1P50454 418 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 KCNQ1P51787 676 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 OR4D1Q15615 310 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 ANKDD1AQ495B1 522 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 RABL3Q5HYI8 236 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 FBXL22Q6P050 247 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 TTC33Q6PID6 262 aaPredicted RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 BLOC1S5Q8TDH9 187 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 PTCD2Q8WV60 388 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 VPS33AQ96AX1 596 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 ISOC1Q96CN7 298 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CCDC126Q96EE4 140 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 GPATCH1Q9BRR8 931 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 LRFN2Q9ULH4 789 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 S1PR4O95977 384 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 PEX11BO96011 259 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 YAP1P46937 504 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 ATN1P54259 1190 aaPredicted RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 DIO3P55073 304 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 TRIM71Q2Q1W2 868 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 MS4A13Q5J8X5 152 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 FAM117BQ6P1L5 589 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 RSPO2Q6UXX9 243 aaPredicted RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 COLGALT2Q8IYK4 626 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 TWIST2Q8WVJ9 160 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 DUS3LQ96G46 650 aaKnown RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 TEX37Q96LM6 180 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CYP2S1Q96SQ9 504 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 ADI1Q9BV57 179 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 RGS18Q9NS28 235 aa16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 CCM2LQ9NUG4 571 aaPredicted RBP16.21■□□□□ 0.19
NKX3-1-201ENST00000380871 TFPTP0C1Z6 253 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 EIF4EBP2Q13542 120 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 CCSAPQ6IQ19 270 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 ZNF549Q6P9A3 640 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TAS1R1Q7RTX1 841 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TMEM173Q86WV6 379 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 DNAJB14Q8TBM8 379 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TRPC4APQ8TEL6 797 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 ARMC1Q9NVT9 282 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 RNF103-CHMP3A0A140T963 221 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 HSPA8P11142 646 aaKnown RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TYMPP19971 482 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 OR1E1P30953 314 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 MAPK10P53779 464 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 HERVK_113P63132 956 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TIAL1Q01085 375 aaKnown RBP eCLIP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 ZNF33AQ06730 810 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 KIAA0408Q6ZU52 694 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 C12orf43Q96C57 262 aaKnown RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TBATAQ96M53 351 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 UROC1Q96N76 676 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 ERVK-6Q9BXR3 956 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 UXTQ9UBK9 157 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 FGF10O15520 208 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 MMP2P08253 660 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 IRF1P10914 325 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SLC6A2P23975 617 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 CLCN2P51788 898 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 GALNT3Q14435 633 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SEMA3AQ14563 771 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 NFE2Q16621 373 aaPredicted RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SCIMPQ6UWF3 145 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 RNF19BQ6ZMZ0 732 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 GPR141Q7Z602 305 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SLC22A9Q8IVM8 553 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TUBGCP3Q96CW5 907 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SCLYQ96I15 445 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SMIM14Q96QK8 99 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 TRIM62Q9BVG3 475 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 PRKD2Q9BZL6 878 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 NAA50Q9GZZ1 169 aaKnown RBP16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 AGPAT4Q9NRZ5 378 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 SLC8A2Q9UPR5 921 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 ARL5AQ9Y689 179 aa16.2■□□□□ 0.18
NKX3-1-201ENST00000380871 ZFC3H1O60293 1989 aaKnown RBP16.19■□□□□ 0.18
NKX3-1-201ENST00000380871 EI24O14681 340 aa16.19■□□□□ 0.18
NKX3-1-201ENST00000380871 ARPC2O15144 300 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms