RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SLCO4A1Q96BD0 722 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 DCUN1D1Q96GG9 259 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 CAPNS2Q96L46 248 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 UBAP1Q9NZ09 502 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 MTRRQ9UBK8 725 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 FKBPLQ9UIM3 349 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 BTRCQ9Y297 605 aa13.33□□□□□ -0.28
CCDC3-202ENST00000378839 FNDC3AQ9Y2H6 1198 aaKnown RBP13.33□□□□□ -0.28
CCDC3-202ENST00000378839 ECI2O75521 394 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 OGNP20774 298 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 MZF1P28698 734 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 FOLH1Q04609 750 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 GRAMD1BQ3KR37 738 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 C6orf10Q5SRN2 563 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 IL23RQ5VWK5 629 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 RNF219Q5W0B1 726 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 TMEM102Q8N9M5 508 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 WFDC5Q8TCV5 224 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 ESAMQ96AP7 390 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 FAR2Q96K12 515 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 GPR21Q99679 349 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 MRPL1Q9BYD6 325 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 PAPOLBQ9NRJ5 636 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 MAP10Q9P2G4 905 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 CD300AQ9UGN4 299 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 GBF1Q92538 1859 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 H7C4K7 107 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 CLASP2O75122 1294 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 NIPSNAP2O75323 286 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 PSMA3P25788 255 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 PMLP29590 882 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 PSMD8P48556 350 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 ADGRE1Q14246 886 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 HECTD3Q5T447 861 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 KANK2Q63ZY3 851 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 UGT3A1Q6NUS8 523 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 RNF168Q8IYW5 571 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 SIDT2Q8NBJ9 832 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 PXYLP1Q8TE99 480 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 ATP6V1E2Q96A05 226 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 FUBP1Q96AE4 644 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 VWCEQ96DN2 955 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 ZFRQ96KR1 1074 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 NACA2Q9H009 215 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 CWH43Q9H720 699 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 HMX1Q9NP08 348 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 SMPD4Q9NXE4 827 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 UTP6Q9NYH9 597 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 RAI2Q9Y5P3 530 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 NPEPPSL1A6NEC2 478 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 IQCF5A8MTL0 148 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 PEX1O43933 1283 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 RHOBTB1O94844 696 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 LINC00032P0C843 101 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 EEF1DP29692 281 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 SLC11A2P49281 568 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 KPNA1P52294 538 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 UGT2A3Q6UWM9 527 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 C2orf15Q8WU43 125 aaKnown RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 TWIST2Q8WVJ9 160 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 KIAA1191Q96A73 305 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 KLF16Q9BXK1 252 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 TRIM8Q9BZR9 551 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 SCUBE2Q9NQ36 999 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 C6orf203Q9P0P8 240 aaPredicted RBP13.32□□□□□ -0.28
CCDC3-202ENST00000378839 RIMKLBQ9ULI2 386 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 TBC1D30Q9Y2I9 924 aa13.32□□□□□ -0.28
CCDC3-202ENST00000378839 NCF1BA6NI72 391 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 NCF1CA8MVU1 366 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TRIM38O00635 465 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 CAPNS1P04632 268 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 RHOCP08134 193 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 SNRPB2P08579 225 aaKnown RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 NCF1P14598 390 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 CHRM3P20309 590 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 CDKL1Q00532 357 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TAF1AQ15573 450 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 CLYBLQ8N0X4 340 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 RHEBL1Q8TAI7 183 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 ADAMTS19Q8TE59 1207 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 SEPT8Q92599 483 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TMEM175Q9BSA9 504 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TRMOQ9BU70 441 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TFB2MQ9H5Q4 396 aaKnown RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 SEMA4BQ9NPR2 832 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 SLC52A3Q9NQ40 469 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 DTNAQ9Y4J8 743 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TIMM22Q9Y584 194 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 ILVBLA1L0T0 632 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 K7ERQ8 282 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 GREM1O60565 184 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 FGF4P08620 206 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 PIM1P11309 404 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 SMARCB1Q12824 385 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 PLD1Q13393 1074 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 PTPRNQ16849 979 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 GABPB2Q8TAK5 448 aaPredicted RBP13.31□□□□□ -0.28
CCDC3-202ENST00000378839 TEX37Q96LM6 180 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 UNC93B1Q9H1C4 597 aa13.31□□□□□ -0.28
CCDC3-202ENST00000378839 POPDC3Q9HBV1 291 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms