RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 WFIKKN2Q8TEU8 576 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 CHFRQ96EP1 664 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 SGF29Q96ES7 293 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 C19orf43Q9BQ61 176 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 MRPL57Q9BQC6 102 aaKnown RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 PLCD4Q9BRC7 762 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 BRD9Q9H8M2 597 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 ZFP14Q9HCL3 533 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 ELOVL2Q9NXB9 296 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 ANTXRLA6NF34 631 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 NEMP2A6NFY4 417 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 TBX10O75333 385 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 UBOX5O94941 541 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 PRAMEF1O95521 474 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 KITP10721 976 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 CHRM1P11229 460 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 ZNF37AP17032 561 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 HOXB8P17481 243 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 KCNA5P22460 613 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 SLC26A3P40879 764 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 ABCE1P61221 599 aaKnown RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 PTSQ03393 145 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 KDSRQ06136 332 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 ILF2Q12905 390 aaKnown RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 GRM2Q14416 872 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 FAM83EQ2M2I3 478 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 GALNTL6Q49A17 601 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 LIPMQ5VYY2 423 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 CRLF3Q8IUI8 442 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 TXNDC5Q8NBS9 432 aaKnown RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 GPR26Q8NDV2 337 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 PTERQ96BW5 349 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 SLC30A3Q99726 388 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 HEPHQ9BQS7 1158 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 TMEM120AQ9BXJ8 343 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 BRWD1Q9NSI6 2320 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 FAM50BQ9Y247 325 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 PIKFYVEQ9Y2I7 2098 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 H3BMM5 538 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 ASLP04424 464 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 ATP5BP06576 529 aaKnown RBP13.71□□□□□ -0.21
PTPRF-202ENST00000372405 BMP8BP34820 402 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 RECQLP46063 649 aaPredicted RBP13.71□□□□□ -0.21
PTPRF-202ENST00000372405 CCR10P46092 362 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 CORO7P57737 925 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 NFATC2Q13469 925 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 PDGFRLQ15198 375 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 ARSIQ5FYB1 569 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 AGAP9Q5VTM2 703 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 USP45Q70EL2 814 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 TAS2R42Q7RTR8 314 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 CCDC91Q7Z6B0 441 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 ISCA2Q86U28 154 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 NAT14Q8WUY8 206 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 P2RY12Q9H244 342 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 POPDC3Q9HBV1 291 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 GTSE1Q9NYZ3 720 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 DEC1Q9P2X7 70 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 B4GALT6Q9UBX8 382 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 MID2Q9UJV3 735 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 DNAJC16Q9Y2G8 782 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 SLC30A1Q9Y6M5 507 aa13.71□□□□□ -0.21
PTPRF-202ENST00000372405 TRBV5-4A0A0C4DH59 114 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 ZBTB14O43829 449 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 NIPSNAP2O75323 286 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 RHOBTB1O94844 696 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 C1SP09871 688 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 PKMP14618 531 aaKnown RBP13.71□□□□□ -0.22
PTPRF-202ENST00000372405 CD1DP15813 335 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 UGT1A6P19224 532 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 UGT1A1P22309 533 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 UGT1A4P22310 534 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 UGT1A3P35503 534 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 UGT1A5P35504 534 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 NNMTP40261 264 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 OPRD1P41143 372 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 ARFIP2P53365 341 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 ADARP55265 1226 aaKnown RBP13.71□□□□□ -0.22
PTPRF-202ENST00000372405 PFKPQ01813 784 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 ACAP2Q15057 778 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 CHRNA6Q15825 494 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 AARS2Q5JTZ9 985 aaKnown RBP13.71□□□□□ -0.22
PTPRF-202ENST00000372405 PAQR3Q6TCH7 311 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 CBARPQ8N350 705 aaPredicted RBP13.71□□□□□ -0.22
PTPRF-202ENST00000372405 GIMAP7Q8NHV1 300 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 FGF14Q92915 247 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 GPR21Q99679 349 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 KXD1Q9BQD3 176 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 BOCQ9BWV1 1114 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 MYLK2Q9H1R3 596 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 PNPOQ9NVS9 261 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 THG1LQ9NWX6 298 aaKnown RBP13.71□□□□□ -0.22
PTPRF-202ENST00000372405 IKZF3Q9UKT9 509 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 VPS9D1Q9Y2B5 631 aa13.71□□□□□ -0.22
PTPRF-202ENST00000372405 OAS3Q9Y6K5 1087 aaKnown RBP13.71□□□□□ -0.22
PTPRF-202ENST00000372405 GLYATL1P3A0A0U1RQE8 302 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 TSPAN11A1L157 253 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 GOLGA8CPA6NN73 597 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 CHRNGP07510 517 aa13.7□□□□□ -0.22
PTPRF-202ENST00000372405 TFEBP19484 476 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms