RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 PHC3Q8NDX5 983 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 ZCCHC10Q8TBK6 192 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 M0R3G1 203 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 EPN2O95208 641 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 CNPP09543 421 aaKnown RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 GNA13Q14344 377 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 TSTD2Q5T7W7 516 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 FBXL22Q6P050 247 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 CYP2R1Q6VVX0 501 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 SCAIQ8N9R8 606 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 LDLRP01130 860 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 LRPAP1P30533 357 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 MASP1P48740 699 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 NOVP48745 357 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 CAPN13Q6MZZ7 669 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 MARK4Q96L34 752 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 PTPN18Q99952 460 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 IGSF9Q9P2J2 1179 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 ATG13O75143 517 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 PROCP04070 461 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 GSNP06396 782 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 ADH5P11766 374 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 PABPC1P11940 636 aaKnown RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 PDGFRLQ15198 375 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 HAPLN3Q96S86 360 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 CCSER2Q9H7U1 834 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 EQTNQ9NQ60 294 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 TULP2O00295 520 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 RPL3P39023 403 aaKnown RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 C17orf64Q86WR6 236 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 NIPA2Q8N8Q9 360 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 UTP15Q8TED0 518 aaKnown RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 RNF145Q96MT1 663 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 CSKP41240 450 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 CLK3P49761 638 aaKnown RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 FBXO48Q5FWF7 155 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 ZBED3Q96IU2 234 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-204ENST00000367248 GPR21Q99679 349 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 PIGVQ9NUD9 493 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 MAT2BQ9NZL9 334 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 SQORQ9Y6N5 450 aa11.55□□□□□ -0.56
SYNE1-204ENST00000367248 LRP6O75581 1613 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 PDE5AO76074 875 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 INCA1Q0VD86 236 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 WASHC2DQ5SRD0 308 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ZBTB2Q8N680 514 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ZBTB22O15209 634 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 MRPS35P82673 323 aaKnown RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SEMA5AQ13591 1074 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SQLEQ14534 574 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ARSIQ5FYB1 569 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ADCK1Q86TW2 530 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 GPR180Q86V85 440 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 RASGRP3Q8IV61 690 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SLC35F5Q8WV83 523 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 UGT2B28Q9BY64 529 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 LEF1Q9UJU2 399 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SLC28A1O00337 649 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 LYPLA1O75608 230 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 CA3P07451 260 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF865P0CJ78 1059 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 HLA-EP13747 358 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 HOXB2P14652 356 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 STX4Q12846 297 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 INTS11Q5TA45 600 aaKnown RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 LCN9Q8WX39 176 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 TCF12Q99081 682 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 TMEM216Q9P0N5 145 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 FKBPLQ9UIM3 349 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ATP6AP2A0A1C7CYW4 349 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 MYADML2A6NDP7 307 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ATP6AP2O75787 350 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SOD2P04179 222 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SLC30A9Q6PML9 568 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 C17orf99Q6UX52 265 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 KRT73Q86Y46 540 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 TMEM237Q96Q45 408 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SMOQ99835 787 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 BDH2Q9BUT1 245 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 BATF3Q9NR55 127 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 HAPLN1P10915 354 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 MLLT6P55198 1093 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ACAP2Q15057 778 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 MAPKAPK3Q16644 382 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 TMPRSS11BQ86T26 416 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ZC3H7AQ8IWR0 971 aaKnown RBP11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ADGRG2Q8IZP9 1017 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 SLC22A17Q8WUG5 538 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 ZC4H2Q9NQZ6 224 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 DNAJC11Q9NVH1 559 aa11.54□□□□□ -0.56
SYNE1-204ENST00000367248 TTC24A2A3L6 582 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ZNF623O75123 536 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 SMNDC1O75940 238 aaKnown RBP eCLIP11.53□□□□□ -0.56
SYNE1-204ENST00000367248 BPGMP07738 259 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ACTR1BP42025 376 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 HCAR3P49019 387 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 LIMK2P53671 638 aa11.53□□□□□ -0.56
SYNE1-204ENST00000367248 ACTR1AP61163 376 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms