RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 GYS2P54840 703 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 MAGOHP61326 146 aaKnown RBP19.81■□□□□ 0.76
CLN3-205ENST00000359984 ZBTB16Q05516 673 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 CCDC15Q0P6D6 951 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 ZDHHC20Q5W0Z9 365 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 TRIM67Q6ZTA4 783 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 TAOK1Q7L7X3 1001 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 SYT13Q7L8C5 426 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 GALNT7Q86SF2 657 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 TRABD2AQ86V40 505 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 EXOC3L1Q86VI1 746 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 FAM131CQ96AQ9 280 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 COQ10AQ96MF6 247 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 RHOJQ9H4E5 214 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 C2orf42Q9NWW7 574 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 CD84Q9UIB8 345 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 ADAM21Q9UKJ8 722 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 SCML1Q9UN30 329 aa19.81■□□□□ 0.76
CLN3-205ENST00000359984 GABRG2P18507 467 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 CA5AP35218 305 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 CD151P48509 253 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 ACOX1Q15067 660 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 TYSND1Q2T9J0 566 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 CNSTQ6PJW8 725 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 ZNF398Q8TD17 642 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 VPS39Q96JC1 886 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 FAM83DQ9H4H8 585 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 MTO1Q9Y2Z2 717 aaKnown RBP19.8■□□□□ 0.76
CLN3-205ENST00000359984 COQ6Q9Y2Z9 468 aa19.8■□□□□ 0.76
CLN3-205ENST00000359984 RGSL1A5PLK6 1076 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 C6P13671 934 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 UGT1A6P19224 532 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 ITGALP20701 1170 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 UGT1A1P22309 533 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 UGT1A4P22310 534 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 PMLP29590 882 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 UGT1A3P35503 534 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 UGT1A5P35504 534 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 DGKEP52429 567 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 DCDC1P59894 354 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 DMTNQ08495 405 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 NFATC2Q13469 925 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 KIAA1324Q6UXG2 1013 aaKnown RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 TAS2R42Q7RTR8 314 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 SNX20Q7Z614 316 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 SRRM1Q8IYB3 904 aaKnown RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 CXorf40AQ8TE69 158 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 SCAMP4Q969E2 229 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 MTBPQ96DY7 904 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 NECAB3Q96P71 396 aaPredicted RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 ASB8Q9H765 288 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 RAD18Q9NS91 495 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 STK25O00506 426 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 WNT9AO14904 365 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 TSPAN6O43657 245 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 MT-ND3P03897 115 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 TTC31Q49AM3 519 aaPredicted RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 NRSN1Q8IZ57 195 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 DCLK2Q8N568 766 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 ACVR1CQ8NER5 493 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 SCG3Q8WXD2 468 aaKnown RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 SERAC1Q96JX3 654 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 TCF12Q99081 682 aa19.79■□□□□ 0.76
CLN3-205ENST00000359984 POLMQ9NP87 494 aaPredicted RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 NFKBIL1Q9UBC1 381 aaPredicted RBP19.79■□□□□ 0.76
CLN3-205ENST00000359984 ATG13O75143 517 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 RECQL5O94762 991 aaPredicted RBP19.78■□□□□ 0.76
CLN3-205ENST00000359984 CREB1P16220 341 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 ZXDAP98168 799 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 CREB5Q02930 508 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 AARS2Q5JTZ9 985 aaKnown RBP19.78■□□□□ 0.76
CLN3-205ENST00000359984 USP30Q70CQ3 517 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 RAVER1Q8IY67 606 aaKnown RBP19.78■□□□□ 0.76
CLN3-205ENST00000359984 PJA1Q8NG27 643 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 HMGB4Q8WW32 186 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 DTD2Q96FN9 168 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 GPR22Q99680 433 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 RIOK2Q9BVS4 552 aaKnown RBP19.78■□□□□ 0.76
CLN3-205ENST00000359984 CDH19Q9H159 772 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 ABCG8Q9H221 673 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 INTS10Q9NVR2 710 aaKnown RBP19.78■□□□□ 0.76
CLN3-205ENST00000359984 PSD3Q9NYI0 1048 aa19.78■□□□□ 0.76
CLN3-205ENST00000359984 ZNF106Q9H2Y7 1883 aaKnown RBP19.78■□□□□ 0.76
CLN3-205ENST00000359984 TRBV5-4A0A0C4DH59 114 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 AGAP14A8MT82 685 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 RFPL1O75677 317 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 PCDH8O95206 1070 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 ACADMP11310 421 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 TTPAP49638 278 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 GPR33Q49SQ1 333 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 ATP13A5Q4VNC0 1218 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 HENMT1Q5T8I9 393 aaKnown RBP19.77■□□□□ 0.76
CLN3-205ENST00000359984 TIFABQ6ZNK6 161 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 CYP2U1Q7Z449 544 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 SERPINA9Q86WD7 417 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 OR14C36Q8NHC7 312 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.77■□□□□ 0.76
CLN3-205ENST00000359984 CLDN23Q96B33 292 aa19.77■□□□□ 0.76
CLN3-205ENST00000359984 KLF6Q99612 283 aaPredicted RBP19.77■□□□□ 0.76
CLN3-205ENST00000359984 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms