RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SLC7A5Q01650 507 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 LRP8Q14114 963 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 TCAIMQ8N3R3 496 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 IL17RCQ8NAC3 791 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 SPDYE1Q8NFV5 336 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 FAM71BQ8TC56 605 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 CAPS2Q9BXY5 557 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 ITM2CQ9NQX7 267 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 SMG5Q9UPR3 1016 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 CLCA2Q9UQC9 943 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 CDK14O94921 469 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 TRADDQ15628 312 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 NEPROQ6NW34 567 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 AMZ2Q86W34 360 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 TSEN2Q8NCE0 465 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 OR4K2Q8NGD2 314 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 EXT2Q93063 718 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 ZFRQ96KR1 1074 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 PLEKHG4BQ96PX9 1271 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 TDRD1Q9BXT4 1180 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 PCBD2Q9H0N5 130 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 CYP4F12Q9HCS2 524 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 NLE1Q9NVX2 485 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 SOX13Q9UN79 622 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 IGLON5A6NGN9 336 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 PLRG1O43660 514 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 ACSL3O95573 720 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 LDOC1O95751 146 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 RBP1P09455 135 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 JUNDP17535 347 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 FMO4P31512 558 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 RPA3P35244 121 aaPredicted RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 TPMTP51580 245 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 SGSHP51688 502 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 CSE1LP55060 971 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 TBCCQ15814 346 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 CYP2A13Q16696 494 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 ARHGAP36Q6ZRI8 547 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 C3orf62Q6ZUJ4 267 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 DET1Q7L5Y6 550 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 IQCHQ86VS3 1027 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 ASB12Q8WXK4 309 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 UBE2E3Q969T4 207 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 DPEP2Q9H4A9 486 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 TMEM9BQ9NQ34 198 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 APOBEC3BQ9UH17 382 aaKnown RBP9.16□□□□□ -0.94
UPF2-202ENST00000357604 RNF112Q9ULX5 631 aa9.16□□□□□ -0.94
UPF2-202ENST00000357604 ARHGAP10A1A4S6 786 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 CTIFO43310 598 aaKnown RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 RETP07949 1114 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 PTGER3P43115 390 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 E2F1Q01094 437 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ZNF470Q6ECI4 717 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 SLC26A11Q86WA9 606 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 TTC30BQ8N4P2 665 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ZBTB2Q8N680 514 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ZSCAN1Q8NBB4 408 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 PHACTR1Q9C0D0 580 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 LHX3Q9UBR4 397 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ACSL5Q9ULC5 683 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 PIPSLA2A3N6 862 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 PAPSS2O95340 614 aaPredicted RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 KIAA1024LP59773 190 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ZBTB17Q13105 803 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 TUBB8Q3ZCM7 444 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 CXorf57Q6NSI4 855 aaKnown RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 NYAP1Q6ZVC0 841 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 B4GALNT4Q76KP1 1039 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ADIPOR2Q86V24 386 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 OR56A4Q8NGH8 313 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 INPP5DQ92835 1189 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 OR2AG1Q9H205 316 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 EIF2B4Q9UI10 523 aaKnown RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 CDH22Q9UJ99 828 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 NENFQ9UMX5 172 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 VAPBO95292 243 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 SNRPAP09012 282 aaKnown RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 ENO3P13929 434 aaPredicted RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 P2RY2P41231 377 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ARF5P84085 180 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 QPCTQ16769 361 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 PHKG1Q16816 387 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 TRIM61Q5EBN2 209 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 ATG16L1Q676U5 607 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 PARS2Q7L3T8 475 aaKnown RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 STRA8Q7Z7C7 330 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 RHBDD1Q8TEB9 315 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 YIPF2Q9BWQ6 316 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 SYBUQ9NX95 663 aa9.15□□□□□ -0.94
UPF2-202ENST00000357604 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.15□□□□□ -0.94
UPF2-202ENST00000357604 URADA6NGE7 173 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 B4DGG1 531 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 NDUFV2P19404 249 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 MAP7D1Q3KQU3 841 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 PLA2G4EQ3MJ16 856 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 ZNF438Q7Z4V0 828 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 C12orf40Q86WS4 652 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 MYLK4Q86YV6 388 aaPredicted RBP9.15□□□□□ -0.95
UPF2-202ENST00000357604 CHST14Q8NCH0 376 aa9.15□□□□□ -0.95
UPF2-202ENST00000357604 SLC22A18Q96BI1 424 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms