RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RAVER1Q8IY67 606 aaKnown RBP18.28■□□□□ 0.52
CLN3-202ENST00000355477 LRRC57Q8N9N7 239 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 KIAA1524Q8TCG1 905 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 COX14Q96I36 57 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 CALR3Q96L12 384 aaKnown RBP18.28■□□□□ 0.52
CLN3-202ENST00000355477 FAM83DQ9H4H8 585 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 C10orf88Q9H8K7 445 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 TRNAU1APQ9NX07 287 aaKnown RBP18.28■□□□□ 0.52
CLN3-202ENST00000355477 SHOC2Q9UQ13 582 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 ENTPD2Q9Y5L3 495 aa18.28■□□□□ 0.52
CLN3-202ENST00000355477 GRID2IPA4D2P6 1211 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 FADS2P1A8MWK0 482 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 NTN3O00634 580 aaPredicted RBP18.27■□□□□ 0.52
CLN3-202ENST00000355477 TCEA3O75764 348 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 FGF1P05230 155 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 PYGLP06737 847 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 NFKB1P19838 968 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 CDC25BP30305 580 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 PDX1P52945 283 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 CCL7P80098 99 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 HLTFQ14527 1009 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-202ENST00000355477 C14orf28Q4W4Y0 310 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 HENMT1Q5T8I9 393 aaKnown RBP18.27■□□□□ 0.52
CLN3-202ENST00000355477 MARK2Q7KZI7 788 aaKnown RBP18.27■□□□□ 0.52
CLN3-202ENST00000355477 ZNF567Q8N184 647 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 CCHCR1Q8TD31 782 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 HNRNPLLQ8WVV9 542 aaKnown RBP18.27■□□□□ 0.52
CLN3-202ENST00000355477 ATXN7L3BQ96GX2 97 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 QKIQ96PU8 341 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-202ENST00000355477 SYNDIG1Q9H7V2 258 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 ZFYVE1Q9HBF4 777 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 MAGEE1Q9HCI5 957 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 PKD2L2Q9NZM6 624 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 TAAR2Q9P1P5 351 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 TRIM10Q9UDY6 481 aa18.27■□□□□ 0.52
CLN3-202ENST00000355477 PCYT1BQ9Y5K3 369 aaPredicted RBP18.27■□□□□ 0.52
CLN3-202ENST00000355477 OAS3Q9Y6K5 1087 aaKnown RBP18.27■□□□□ 0.52
CLN3-202ENST00000355477 PTPRQQ9UMZ3 2332 aa18.27■□□□□ 0.51
CLN3-202ENST00000355477 BPTFQ12830 3046 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 A0A1W2PQM1 296 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 F5H423 210 aaPredicted RBP18.26■□□□□ 0.51
CLN3-202ENST00000355477 APOC4-APOC2K7ER74 178 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 NDST3O95803 873 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 APOC2P02655 101 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 ATP1A1P05023 1023 aaKnown RBP18.26■□□□□ 0.51
CLN3-202ENST00000355477 GLB1P16278 677 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 CTNNA2P26232 953 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 COPS2P61201 443 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 ILF3Q12906 894 aaKnown RBP eCLIP18.26■□□□□ 0.51
CLN3-202ENST00000355477 PYCR3Q53H96 274 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 CERCAMQ5T4B2 595 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 AADACL2Q6P093 401 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 SLC30A9Q6PML9 568 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 KDELC1Q6UW63 502 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 TMC3Q7Z5M5 1100 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 KIAA1328Q86T90 577 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 Q8N9G6 341 aaPredicted RBP18.26■□□□□ 0.51
CLN3-202ENST00000355477 HTR3CQ8WXA8 447 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 ALG3Q92685 438 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 DESI2Q9BSY9 194 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 GSDMCQ9BYG8 508 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 IMPACTQ9P2X3 320 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 SPO11Q9Y5K1 396 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 RNF215Q9Y6U7 377 aa18.26■□□□□ 0.51
CLN3-202ENST00000355477 A0A087WV48 116 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 PMS2P1A4D2B8 440 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 RGSL1A5PLK6 1076 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 HACD1B0YJ81 288 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 AURKAO14965 403 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 MTSS1O43312 755 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 ASMTLO95671 621 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 RPLP0P05388 317 aaKnown RBP18.25■□□□□ 0.51
CLN3-202ENST00000355477 LSSP48449 732 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 WNT3AP56704 352 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 GABREP78334 506 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 SPIDRQ14159 915 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 NOMO1Q15155 1222 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 COL28A1Q2UY09 1125 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 PID1Q7Z2X4 250 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 C17orf82Q86X59 251 aaPredicted RBP18.25■□□□□ 0.51
CLN3-202ENST00000355477 GPR26Q8NDV2 337 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 OR6C4Q8NGE1 309 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 WDR48Q8TAF3 677 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 ZDHHC1Q8WTX9 485 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 PATE1Q8WXA2 126 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 OXNAD1Q96HP4 312 aaPredicted RBP18.25■□□□□ 0.51
CLN3-202ENST00000355477 DCBLD2Q96PD2 775 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 OSBPL8Q9BZF1 889 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 LRRN3Q9H3W5 708 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 POLR1BQ9H9Y6 1135 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 KLHL8Q9P2G9 620 aaPredicted RBP18.25■□□□□ 0.51
CLN3-202ENST00000355477 LRIT1Q9P2V4 623 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 FAM153AQ9UHL3 310 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 APPL1Q9UKG1 709 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 SATB2Q9UPW6 733 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 ZNF711Q9Y462 761 aa18.25■□□□□ 0.51
CLN3-202ENST00000355477 LOC285095A0A1B0GVY8 99 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 CCDC66A2RUB6 948 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 H7C0C1 242 aa18.24■□□□□ 0.51
CLN3-202ENST00000355477 DNAJC6O75061 913 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms