RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 TMEM9BQ9NQ34 198 aa11.79□□□□□ -0.52
SNCA-202ENST00000345009 CASS4Q9NQ75 786 aa11.79□□□□□ -0.52
SNCA-202ENST00000345009 MBNL1Q9NR56 388 aaKnown RBP11.79□□□□□ -0.52
SNCA-202ENST00000345009 IL17CQ9P0M4 197 aa11.79□□□□□ -0.52
SNCA-202ENST00000345009 NFKBIL1Q9UBC1 381 aaPredicted RBP11.79□□□□□ -0.52
SNCA-202ENST00000345009 CD84Q9UIB8 345 aa11.79□□□□□ -0.52
SNCA-202ENST00000345009 CA5BQ9Y2D0 317 aa11.79□□□□□ -0.52
SNCA-202ENST00000345009 UTP11Q9Y3A2 253 aaKnown RBP11.79□□□□□ -0.52
SNCA-202ENST00000345009 NEU2Q9Y3R4 380 aa11.79□□□□□ -0.52
SNCA-202ENST00000345009 SPTY2D1-AS1A0A0U1RR47 76 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 LNP1A1A4G5 178 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 MAGEB16A2A368 324 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 H0Y8X5 98 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 H3BM21 787 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 AURKAO14965 403 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 TTI1O43156 1089 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 MLNP12872 115 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 IGFALSP35858 605 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 SPAM1P38567 509 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 PTGIRP43119 386 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 CTSKP43235 329 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 OLIG2Q13516 323 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 ITGA9Q13797 1035 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 KCNJ11Q14654 390 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 POU6F1Q14863 301 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 NFATC4Q14934 902 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 HLA-BQ31612 363 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 TCEAL6Q6IPX3 200 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 ADAMTSL4Q6UY14 1074 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 HOOK3Q86VS8 718 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 PARGQ86W56 976 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 TTC30BQ8N4P2 665 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 TRAM1L1Q8N609 369 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 PPHLN1Q8NEY8 458 aaKnown RBP11.78□□□□□ -0.52
SNCA-202ENST00000345009 OR4K2Q8NGD2 314 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 STYXQ8WUJ0 223 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 BTN2A2Q8WVV5 523 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 SCAMP4Q969E2 229 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 TCEAL3Q969E4 200 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 HIC2Q96JB3 615 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 ELF4Q99607 663 aaPredicted RBP11.78□□□□□ -0.52
SNCA-202ENST00000345009 EDEM2Q9BV94 578 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 RAB17Q9H0T7 212 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 SMOC1Q9H4F8 434 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 GAREM1Q9H706 876 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 BPIFA1Q9NP55 256 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 PARD6AQ9NPB6 346 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 SAMD15Q9P1V8 674 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 SNX11Q9Y5W9 270 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 MRFAP1Q9Y605 127 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 ARL5AQ9Y689 179 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 SLCO1B1Q9Y6L6 691 aa11.78□□□□□ -0.52
SNCA-202ENST00000345009 USP34Q70CQ2 3546 aa11.77□□□□□ -0.52
SNCA-202ENST00000345009 GLYATL1P3A0A0U1RQE8 302 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 A0A0U1RQS6 177 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 SDR42E2A6NKP2 422 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 EFCAB8A8MWE9 144 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 ESPNB1AK53 854 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 DNALI1O14645 258 aaPredicted RBP11.77□□□□□ -0.53
SNCA-202ENST00000345009 TNFRSF10CO14798 259 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 WNT1P04628 370 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 ZNF883P0CG24 379 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 MYCLP1P12525 358 aaPredicted RBP11.77□□□□□ -0.53
SNCA-202ENST00000345009 BPIP17213 487 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 GM2AP17900 193 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 TGM1P22735 817 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 RXRGP48443 463 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 TERF1P54274 439 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 SESN2P58004 480 aaPredicted RBP11.77□□□□□ -0.53
SNCA-202ENST00000345009 KIAA1024LP59773 190 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 HNRNPKP61978 463 aaKnown RBP eCLIP11.77□□□□□ -0.53
SNCA-202ENST00000345009 PPARDQ03181 441 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 C2orf54Q08AI8 447 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 CALCOCO2Q13137 446 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 SLC14A1Q13336 389 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 MORF4L2Q15014 288 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 ZNF423Q2M1K9 1284 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 INAVAQ3KP66 663 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 PCID2Q5JVF3 399 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 HENMT1Q5T8I9 393 aaKnown RBP11.77□□□□□ -0.53
SNCA-202ENST00000345009 ALS2CLQ60I27 953 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 CASC4Q6P4E1 433 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 MACC1Q6ZN28 852 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 HEATR4Q86WZ0 1026 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 KIAA2013Q8IYS2 634 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 MINDY1Q8N5J2 469 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 PLA2G15Q8NCC3 412 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 CPT1BQ92523 772 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 PEX13Q92968 403 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 SNF8Q96H20 258 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 WDR92Q96MX6 357 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 RANBP9Q96S59 729 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 TTC1Q99614 292 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 ERP44Q9BS26 406 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 TEX101Q9BY14 249 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 SLC13A1Q9BZW2 595 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 IL26Q9NPH9 171 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 PIH1D1Q9NWS0 290 aaKnown RBP11.77□□□□□ -0.53
SNCA-202ENST00000345009 DNAJC28Q9NX36 388 aa11.77□□□□□ -0.53
SNCA-202ENST00000345009 RIMKLBQ9ULI2 386 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms