RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RNASE11Q8TAA1 199 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 PIGKQ92643 395 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 HDAC2Q92769 488 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 GTPBP3Q969Y2 492 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 ACO2Q99798 780 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 EQTNQ9NQ60 294 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 SMPD3Q9NY59 655 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 ZNF224Q9NZL3 707 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ADAM30Q9UKF2 790 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 OR51F1A6NGY5 319 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 CD3EAPO15446 510 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 FFAR2O15552 330 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 LGALS2P05162 132 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 PRG2P13727 222 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ARF4P18085 180 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 UGT1A6P19224 532 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 UGT1A1P22309 533 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 UGT1A4P22310 534 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 UGT1A3P35503 534 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 UGT1A5P35504 534 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MAPKAPK2P49137 400 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MTAPQ13126 283 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MAD2L1Q13257 205 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 NDUFA5Q16718 116 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 UAP1L1Q3KQV9 507 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 TIMM50Q3ZCQ8 353 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ARMC6Q6NXE6 501 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 FRMD7Q6ZUT3 714 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 CPSF7Q8N684 471 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 SERPINB11Q96P15 392 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 CDK15Q96Q40 435 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 OSBPL6Q9BZF3 934 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ZNF304Q9HCX3 659 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 OAS3Q9Y6K5 1087 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 GSAPA4D1B5 854 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MAGEC1O60732 1142 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 IPO13O94829 963 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 C9P02748 559 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 PTPRAP18433 802 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 FMO3P31513 532 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 RCVRNP35243 200 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 PSEN1P49768 467 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 TAS2R39P59534 338 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 TRAP1Q12931 704 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 NPY5RQ15761 445 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 SLC25A24Q6NUK1 477 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ZNF613Q6PF04 617 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 KLHDC10Q6PID8 442 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 CIR1Q86X95 450 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 ZNF433Q8N7K0 673 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 BANPQ8N9N5 519 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 FAM110BQ8TC76 370 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ING5Q8WYH8 240 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 C11orf24Q96F05 449 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 PARK7Q99497 189 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 ZNF670Q9BS34 389 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MLPHQ9BV36 600 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 ELOVL4Q9GZR5 314 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 RHOJQ9H4E5 214 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 APOBEC3GQ9HC16 384 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 DNAAF2Q9NVR5 837 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 A0A1W2PPW3 197 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 TBKBP1A7MCY6 615 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 AP3D1O14617 1153 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 WFS1O76024 890 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 DIRAS1O95057 198 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 RLN1P04808 185 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 NR2F1P10589 423 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 CETPP11597 493 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 GPAT3Q53EU6 434 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 DACT2Q5SW24 774 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 ZNF280DQ6N043 979 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 CXorf57Q6NSI4 855 aaKnown RBP8.66□□□□□ -1.02
RTN3-202ENST00000339997 ZNF544Q6NX49 715 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 ZNF549Q6P9A3 640 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 THAP5Q7Z6K1 395 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 SLC9A9Q8IVB4 645 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 STK40Q8N2I9 435 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 LRRC17Q8N6Y2 441 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 ANKRD52Q8NB46 1076 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 ACMSDQ8TDX5 336 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 MKL1Q969V6 931 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 MYLPFQ96A32 169 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 COLEC11Q9BWP8 271 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 OXCT2Q9BYC2 517 aaPredicted RBP8.66□□□□□ -1.02
RTN3-202ENST00000339997 OAZ3Q9UMX2 235 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 TESMINQ9Y4I5 508 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 PCDHB5Q9Y5E4 795 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 GPC6Q9Y625 555 aaPredicted RBP8.66□□□□□ -1.02
RTN3-202ENST00000339997 FAM172BPA6NC97 362 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.66□□□□□ -1.02
RTN3-202ENST00000339997 PGK1P00558 417 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 CYP3A4P08684 503 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 SPATA31D3P0C874 917 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 MATKP42679 507 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 HSPA7P48741 367 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 PRKAA2P54646 552 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 ACTR3P61158 418 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 LAPTM5Q13571 262 aa8.66□□□□□ -1.02
RTN3-202ENST00000339997 IL18Q14116 193 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms