RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PKP3Q9Y446 797 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 PCDHGA1Q9Y5H4 931 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 SPO11Q9Y5K1 396 aa13.94□□□□□ -0.18
LIMS1-201ENST00000332345 C2orf81A6NN90 581 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 AURKAO14965 403 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 YY2O15391 372 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 METTL18O95568 372 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 SOD1P00441 154 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 SLC4A1P02730 911 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 GIMD1P0DJR0 217 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 BPIP17213 487 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 FDFT1P37268 417 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 RPIAP49247 311 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 GDF10P55107 478 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 DAB2P98082 770 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 PDE1BQ01064 536 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 FOXC1Q12948 553 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 SIX1Q15475 284 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-201ENST00000332345 DEFB133Q30KQ1 61 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 PROX2Q3B8N5 592 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 PDPK2PQ6A1A2 396 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 C4orf22Q6V702 233 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 KLHDC8BQ8IXV7 354 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 PNPLA1Q8N8W4 532 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 GPR26Q8NDV2 337 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 ADAMTS14Q8WXS8 1223 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 PDXPQ96GD0 296 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 PLEKHG4BQ96PX9 1271 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 AGAP2Q99490 1192 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 TBL1YQ9BQ87 522 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 FRMD8Q9BZ67 464 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-201ENST00000332345 CLPBQ9H078 707 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 CAAP1Q9H8G2 361 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 LRRC40Q9H9A6 602 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 FGF22Q9HCT0 170 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 MRPL40Q9NQ50 206 aaKnown RBP13.93□□□□□ -0.18
LIMS1-201ENST00000332345 NFKBIL1Q9UBC1 381 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-201ENST00000332345 SLC17A4Q9Y2C5 497 aa13.93□□□□□ -0.18
LIMS1-201ENST00000332345 ERI2A8K979 691 aaKnown RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 INPP4BO15327 924 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 ASMTLO95671 621 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 CRTAMO95727 393 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 IVLP07476 585 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 CKMT1AP12532 417 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 LPOP22079 712 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 ACP1P24666 158 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 PMLP29590 882 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 DNAJC3Q13217 504 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 ILKQ13418 452 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 PEX6Q13608 980 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TAF1AQ15573 450 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 CCDC157Q569K6 752 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 KCTD11Q693B1 232 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 GSTA5Q7RTV2 222 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TAF8Q7Z7C8 310 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 LINC00523Q86TU6 105 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 RASGEF1CQ8N431 466 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TTC30BQ8N4P2 665 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TRAM1L1Q8N609 369 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 BRSK1Q8TDC3 778 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 COX14Q96I36 57 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 APOLD1Q96LR9 279 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 APOL2Q9BQE5 337 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TMEM168Q9H0V1 697 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 CARS2Q9HA77 564 aaKnown RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 BPIFA1Q9NP55 256 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TRNAU1APQ9NX07 287 aaKnown RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TOR4AQ9NXH8 423 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 IL17CQ9P0M4 197 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 PAK5Q9P286 719 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 ANGPTL2Q9UKU9 493 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 CNOT6Q9ULM6 557 aaKnown RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TTC7AQ9ULT0 858 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-201ENST00000332345 TMEM98Q9Y2Y6 226 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 LRP4O75096 1905 aa13.92□□□□□ -0.18
LIMS1-201ENST00000332345 KNTC1P50748 2209 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 E7EVH7 732 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 CES2O00748 559 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 STX7O15400 261 aaKnown RBP13.91□□□□□ -0.18
LIMS1-201ENST00000332345 DKK1O94907 266 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 SLC25A14O95258 325 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-201ENST00000332345 AP2A1O95782 977 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 ATP1A1P05023 1023 aaKnown RBP13.91□□□□□ -0.18
LIMS1-201ENST00000332345 GNPDA1P46926 289 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 POLD2P49005 469 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 LMAN1P49257 510 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 E2F1Q01094 437 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 SPARCL1Q14515 664 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 C6orf132Q5T0Z8 1188 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 ALS2CLQ60I27 953 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 DENND5AQ6IQ26 1287 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 DOK6Q6PKX4 331 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 RAB44Q7Z6P3 723 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-201ENST00000332345 CHCHD4Q8N4Q1 142 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 PDCD7Q8N8D1 485 aaKnown RBP13.91□□□□□ -0.18
LIMS1-201ENST00000332345 DTX3LQ8TDB6 740 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 SCARF2Q96GP6 870 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-201ENST00000332345 OSBPL9Q96SU4 736 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 BOCQ9BWV1 1114 aa13.91□□□□□ -0.18
LIMS1-201ENST00000332345 RMI1Q9H9A7 625 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms