RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 IFNW1P05000 195 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 PDX1P52945 283 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 SLC5A3P53794 718 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 FAM136AQ96C01 138 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 UNC93B1Q9H1C4 597 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 ATP13A3Q9H7F0 1226 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 PRDM5Q9NQX1 630 aaPredicted RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 PREX1Q8TCU6 1659 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 RP2O75695 350 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 SRPRAP08240 638 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 GSTT2P0CG29 244 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 TCF7P36402 384 aaPredicted RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 KIR3DL1P43629 444 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 OR1G1P47890 313 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 PLK1P53350 603 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 IRF8Q02556 426 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 ZBED5Q49AG3 693 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 RBFAQ8N0V3 343 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 TOR1AIP2Q8NFQ8 470 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 CRAMP1Q96RY5 1269 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 UNKQ9C0B0 810 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 MSR1P21757 451 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 POLR2JP52435 117 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 GFM1Q96RP9 751 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 BHLHE41Q9C0J9 482 aaPredicted RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 IGSF9Q9P2J2 1179 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 LGALS13Q9UHV8 139 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 FGBP02675 491 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 C6orf222P0C671 652 aaPredicted RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 MIPP30301 263 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 FAM71AQ8IYT1 594 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 UNC5BQ8IZJ1 945 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 OR52K2Q8NGK3 314 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 CLP1Q92989 425 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 RBM7Q9Y580 266 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 LMTK2Q8IWU2 1503 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 NDUFS2O75306 463 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 DNTTP04053 509 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 PVALBP20472 110 aaPredicted RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 CA9Q16790 459 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 SDR16C5Q8N3Y7 309 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 MAB21L3Q8N8X9 362 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 DGKBQ9Y6T7 804 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 FAM205AQ6ZU69 1335 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 TNNI3P19429 210 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 SLC15A1P46059 708 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 MPP1Q00013 466 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 RASGEF1AQ8N9B8 481 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 EPHA3P29320 983 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 ADAM15Q13444 863 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 LARS2Q15031 903 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 AHSA2Q719I0 299 aa14.24□□□□□ -0.13
COL7A1-201ENST00000328333 DNAAF2Q9NVR5 837 aaKnown RBP14.24□□□□□ -0.13
COL7A1-201ENST00000328333 CENPBD1B2RD01 187 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 KAT7O95251 611 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SLC2A2P11168 524 aaPredicted RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 EHD4Q9H223 541 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 PMF1-BGLAPU3KQ54 211 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SPTBP11277 2137 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SUPT20HL2P0C7V6 817 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 RPS12P25398 132 aaKnown RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 GPAT3Q53EU6 434 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 ZCCHC12Q6PEW1 402 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 BBS12Q6ZW61 710 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 C11orf65Q8NCR3 313 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SIPA1Q96FS4 1042 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 CCDC86Q9H6F5 360 aaKnown RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 TDRD3Q9H7E2 651 aaKnown RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SNX15Q9NRS6 342 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 KDM4BO94953 1096 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 BCL2L1Q07817 233 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 MAB21L2Q9Y586 359 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 A0A0J9YYE9 177 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 EML1O00423 815 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 PNLIPRP1P54315 467 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 CHRDL2Q6WN34 429 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SAPCD2Q86UD0 394 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 OR4A15Q8NGL6 344 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 PCDHGB2Q9Y5G2 931 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 PPRC1Q5VV67 1664 aaKnown RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 CAPN8A6NHC0 703 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 LLGL2Q6P1M3 1020 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 TSEN15Q8WW01 171 aaKnown RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 ABCC13Q9NSE7 274 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 MAU2Q9Y6X3 613 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 ELOVL7A1L3X0 281 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 ACADMP11310 421 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 CCNB1P14635 433 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 TPTEP56180 551 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 USP4Q13107 963 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 FAM98AQ8NCA5 519 aaKnown RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 DNAJB3Q8WWF6 145 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 FCRL4Q96PJ5 515 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 TMEM109Q9BVC6 243 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SLC9A3R1O14745 358 aaPredicted RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 PDPK1O15530 556 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 URODP06132 367 aa14.23□□□□□ -0.13
COL7A1-201ENST00000328333 SAGP10523 405 aaPredicted RBP14.23□□□□□ -0.13
COL7A1-201ENST00000328333 RPL38P63173 70 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms